Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20maxima_20[genbank_20GCA_5F000499605.1_202013-11-06] 3,564 sequences; 45,975,062 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq648 217 1e-50 seq655 192 5e-43 seq2330 91.5 1e-12 seq1860 86.0 5e-11 seq430 86.0 5e-11 >seq648 Length=64315 Score = 217 bits (240), Expect = 1e-50 Identities = 437/643 (68%), Gaps = 4/643 (1%) Strand=Plus/Minus Query 551950 GTACTCAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATA-CGCCT 552008 |||| ||| | ||||| || | ||| |||| |||||| |||||||| | | ||| Sbjct 1270 GTACACAAGCTACTATAGAGATTGATAGTTTATATGAGGGTATTGATTACTCTGTCTCCT 1211 Query 552009 ATTTCGAGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCA 552068 | || ||||| | ||| || || | ||| ||| || | || | || ||| Sbjct 1210 -TATCTAGGGCTAGATTCGAGGAATTATGTATGGATTATTTCCGTAACTCTCTTATACCC 1152 Query 552069 GTAGAACAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTT 552128 |||||| |||| ||| |||| || || ||||| | |||||||| | || || Sbjct 1151 GTAGAAAAAGTACTAAAAGATAGTAATATAGATAAGAGGAGTGTACATGAGGTAGTACTG 1092 Query 552129 GTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAATGTTA-AGTTCTTATTTCAATGG 552187 || || || |||||||| || || || | || | || | || ||| ||||| Sbjct 1091 GTAGGAGGGAGCACAAGAATACCCAAGATACAACAACTTATACAAGAATTCTTT-AATGG 1033 Query 552188 TAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCA 552247 ||| || | | | | ||||||| |||||||||||||| |||||||| || | || Sbjct 1032 TAAGGAACCATGTAGATCTATTAATCCTGATGAGGCTGTTGCTTATGGTGCAGCTGTACA 973 Query 552248 AGCAGCTATTCTTTCTGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGT 552307 |||||||| || ||| || | | | || ||||| || | || | ||||||| Sbjct 972 GGCAGCTATACTAAAAGGAGTAAATAGTACACAAGTACAAGATTTATTATTATTAGATGT 913 Query 552308 TACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAG 552367 | ||||| |||| | || |||| |||| ||||| | ||||| || | || || || Sbjct 912 TGCTCCTTTATCATTAGGACTAGAGACAGCAGGAGGAGTAATGACAAAATTAATAGAGAG 853 Query 552368 AAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAAC 552427 ||||| || || || |||||||| | |||| | || ||| |||||||||| | Sbjct 852 GAATACAACAATACCAACAAAAAAATCGCAAATATTCACAACATATGCAGATAATCAGCC 793 Query 552428 TGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACT 552487 | ||| ||||| | | ||| || || || | | ||||| ||||||||| ||| Sbjct 792 AGGTGTACTTATTCAGGTGTATGAGGGGGAGAGGGCAATGACTAAGGATAATAATTTACT 733 Query 552488 TGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGT 552547 || | || || |||| ||||| |||||||| ||| | |||||||| ||||| || || Sbjct 732 AGGAAAGTTCCATCTAGATGGTATACCTCCTGCACCTAGAGGAGTACCACAAATAGAGGT 673 Query 552548 TACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCT 552590 ||| || ||||| ||||||||||| ||| ||||||| |||||| Sbjct 672 TACCTTTGATATAGATGCCAATGGTATTATGAATGTTACTGCT 630 Score = 206 bits (228), Expect = 2e-47 Identities = 453/665 (68%), Gaps = 24/665 (4%) Strand=Plus/Minus Query 549923 AATAAA-AAT-TAAATAATTTAAAGA-TATGAATCTTATATTTTGACATAAGATATAATG 549979 |||||| ||| |||||||| |||| | ||| ||| || || | |||||| | ||| Sbjct 2160 AATAAATAATATAAATAATATAAATAATATAAATAATA-ATAAATA-ATAAGAGAAGATG 2103 Query 549980 TCAAACAAAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGG 550039 || | | ||| ||||||||||||| || || |||||| ||||| ||||| ||| Sbjct 2102 TCTGAGGCACCAGCAGTAGGTATAGATTTGGGTACAACATATTCATGTGTAGGTGTATGG 2043 Query 550040 CAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTAT 550099 | |||| | || || || || || |||||||||||||| | || || || |||||| Sbjct 2042 AAGAATGATGGTGTAGAGATAATAGCAAATGATCAAGGTAATCGTACAACCCCTTCTTAT 1983 Query 550100 GTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGT 550159 || | || ||||| || || ||||| || ||||||||||| |||| | | | Sbjct 1982 GTAGCATTTACGGATACAGAGAGATTAGTAGGGGATGCAGCAAAGAATCAGGTAGCAAGG 1923 Query 550160 AATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCG 550219 ||||| ||||| | |||||||| ||| | || || || || | | | | ||| | Sbjct 1922 AATCCAGAGAATACAGTATTTGATGCAAAAAGGTTGATAGGTAGGAAGTATGACGATCCA 1863 Query 550220 ACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAA---TGTTTCTGGA--- 550273 |||| |||||||| |||||||||||||| || |||||||| | | ||| Sbjct 1862 GCTGTACAGGCAGACATGAAGCATTGGCCATT---TATTGTTAAGGGAGGACCAGGAGGT 1806 Query 550274 AAACCTTATATTGAAGCTACTCATGAAGG-ATCTGTTAAACAATTTTCA-CCAGAACAAA 550331 ||||| | || |||| | | | |||| || ||||| ||||| || || | | Sbjct 1805 AAACCATTAATAGAAGTAAATTACCAAGGAATAAAGAAAACA--TTTCATCCTGAGGAGA 1748 Query 550332 TTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAG 550391 | | ||||| |||||||| ||||| | | || ||| | ||| ||||| Sbjct 1747 TAAGTGCCATGGTATTAATGAAGATGAAGGAGATTGCTGAACAATTTATAGGTAAAGAAA 1688 Query 550392 TTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTA 550451 | | || ||||||||||| ||||| ||||| |||||||| ||||| | || || || | Sbjct 1687 TAAAAGAAGCAGTAATAACAGTACCTGCATACTTTAATGATTCACAGAGACAGGCAACAA 1628 Query 550452 AAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTG 550511 ||||||| || ||| || ||| | ||||| | ||||| || ||||| || || || | Sbjct 1627 AAGATGCAGGTACTATAGCAGGATTAAATGTATTACGTATAATAAATGAGCCAACAGCAG 1568 Query 550512 CTGCACTTGCATATGGACTTGATAAACATAATGATCA---AGAACTTAATGTACTCATCT 550568 | ||| | || ||||| | |||| | || | || ||| | ||||| || |||| Sbjct 1567 CAGCAATAGCCTATGGGTTGGATA---AGAAGGGACAAGGAGAGATGAATGTTCTTATCT 1511 Query 550569 TTGAT 550573 ||||| Sbjct 1510 TTGAT 1506 >seq655 Length=63591 Score = 192 bits (212), Expect = 5e-43 Identities = 375/547 (69%), Gaps = 8/547 (1%) Strand=Plus/Plus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 || ||||| ||||| || || ||||| || ||||| || | | | || || Sbjct 60744 ATTGGTATTGATTTGGGTACGACATACTCGTGCGTTGGGGTGTATAGACAGGGACGTGTA 60803 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 || || || | ||||||||||| || | | |||||| |||||| ||||| | || Sbjct 60804 GATATAATACCTAATGATCAAGGAAATCGTATTACTCCTAGTTATGTATCTTTTGCTGAT 60863 Query 550115 ACTGA-ACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATAC 550173 ||| | | || | || || |||||||| | | || | ||| || || ||||| Sbjct 60864 GATGAGAGACGTA-TAGGAGAAGCAGCAAAGAACGAGGCAGCAAATAACCCAACAAATAC 60922 Query 550174 TATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGA 550233 || ||||||| |||||| |||| || ||||| |||||||| || || ||| Sbjct 60923 AATATTTGATGTAAAACGTCTAATAGGGAGAAGATTTAATGAGAAAGAAGTACAAAGAGA 60982 Query 550234 TATGAAGCATTGG--CCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT 550291 || ||| ||| |||| | ||| ||||| ||| ||||||||||| | | Sbjct 60983 TA--AAGAATTACTTCCTTATAATATTATTAATAAAGATGGTAAACCTTATATACGTGTT 61040 Query 550292 ACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATG 550351 | | | ||| |||| |||| |||| || || | || ||||||| ||| Sbjct 61041 ATGGTTAAGGGACAACCTAAAGAATTAGCACCTGAGGAAGTATCTGCTATGGTCTTAGGT 61100 Query 550352 AAAATGAAACAAACAGCCAGTGCTTT-TGTTGGTCAAGAAGTTACGGATGCAGTAATAAC 550410 |||||||| || || || | || | ||||| ||||||||| | |||| || | || Sbjct 61101 AAAATGAAGGAAGTTGC-AGAGAATTATCTTGGTAAAGAAGTTAAGAATGCTGTTGTTAC 61159 Query 550411 TGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGC 550470 ||| || ||||| |||||||| ||||| | ||||| || ||||| || || |||||| Sbjct 61160 TGTTCCTGCATACTTTAATGATGCACAAAGACAAGCAACAAAAGACGCAGGTGCTATTGC 61219 Query 550471 TGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACT 550530 || ||||||||| |||||||||| |||||||||||||||||||| |||| || || || Sbjct 61220 AGGTCTTAATGTTATTCGTATTATTAATGAACCTACTGCTGCTGCTATTGCTTACGGTCT 61279 Query 550531 TGATAAA 550537 ||||||| Sbjct 61280 TGATAAA 61286 Score = 114 bits (126), Expect = 1e-19 Identities = 223/325 (69%), Gaps = 12/325 (4%) Strand=Plus/Plus Query 552060 ATTGAA-CCAGTAGAACAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGA 552118 |||||| || || |||||||| | |||| || | | | ||||| | || | || Sbjct 61994 ATTGAAACCTGTTAAACAAGTTCTTGAAGATGCAGACTTAAAGAAATCACAGATAGACGA 62053 Query 552119 AATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAATG-TTAAGTTCTT 552177 |||||| ||||||||||| || ||| | |||||||| || | || | ||||| || Sbjct 62054 AATTGTTCTTGTTGGTGGTTCAACACGTATTCCTAAGATCCAACAACTTATTAAGGAATT 62113 Query 552178 ATTTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTG 552237 ||| || |||||| | || | | ||||||| ||||| || ||||| ||||||| Sbjct 62114 CTTT-AACGGTAAAGAGCCTAACAGAGGAATTAATCCTGATGAAGCCGTTGCTTATGGTG 62172 Query 552238 CCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAAAACTACAAAATATTGTAC 552297 | || | ||||||| ||| | || ||| || | || |||| |||| || Sbjct 62173 CAGCTGTACAAGCAGGTATCTTATCAGGAGAAGGT--------AC-ACAAGATATGGTCT 62223 Query 552298 TTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATC 552357 | | |||||||||||||| |||||||| | || |||| ||||||| | ||| |||| Sbjct 62224 TACTTGATGTTACTCCTCTTACTCTTGGTATTGAGACAGCTGGAGGTGTCATGGCTAAAG 62283 Query 552358 TTATCGATAGAAATACTACTATTCC 552382 |||| | | ||||| |||||| Sbjct 62284 TTATTAACAAGAATACCGTTATTCC 62308 Score = 98.7 bits (108), Expect = 8e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 361701 CAAGACCATAAGCTAATGAAGCAGCTGTTGGTTCGTTAATTATTTTAATAACATTGAGTC 361760 ||||||| ||||| | | |||||| || ||||| ||||| || ||||||||| || | Sbjct 61281 CAAGACCGTAAGCAATAGCAGCAGCAGTAGGTTCATTAATAATACGAATAACATTAAGAC 61222 Query 361761 CCGCTATTTTTGATGCATCTAAAGTGGCTTGACGTTGTGCATCATTAAAATATGCAGGAA 361820 | || || ||| ||| || ||||| | ||||||||||||||| |||||||||| Sbjct 61221 CTGCAATAGCACCTGCGTCTTTTGTTGCTTGTCTTTGTGCATCATTAAAGTATGCAGGAA 61162 Query 361821 CAGTAATCACTGCTTTTTCAACTT 361844 |||||| || || || | ||||| Sbjct 61161 CAGTAACAACAGCATTCTTAACTT 61138 >seq2330 Length=2393 Score = 91.5 bits (100), Expect = 1e-12 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 563259 ACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGA 563318 ||| || || | |||||||||| || || ||| |||||||| | || || || Sbjct 226 ACGCAGCACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAATCGGAAAGCGTCCTGCC 167 Query 563319 ATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTT 563378 ||| || || || || ||||| ||||| || | ||||||||||||||||| || || || Sbjct 166 ATCCTCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCAGGAGGAATACCCTCCTT 107 Query 563379 ATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAA 563437 ||| ||||| || || || ||| || ||||| | || ||| || | ||| | Sbjct 106 ATCCTGAATCTTCGCCTTCACATTCTCGATCGTATCTGATGGTTCGACA-TCCAAAGTGA 48 Query 563438 CAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || ||||| ||||| || ||||| || ||||| Sbjct 47 TGGTCTTTCCAGTCAGAGTCTTCACGAAGATCTGCAT 11 Score = 91.5 bits (100), Expect = 1e-12 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 563259 ACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGA 563318 ||| || || | |||||||||| || || ||| |||||||| | || || || Sbjct 454 ACGCAGCACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAATCGGAAAGCGTCCTGCC 395 Query 563319 ATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTT 563378 ||| || || || || ||||| ||||| || | ||||||||||||||||| || || || Sbjct 394 ATCCTCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCAGGAGGAATACCCTCCTT 335 Query 563379 ATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAA 563437 ||| ||||| || || || ||| || ||||| | || ||| || | ||| | Sbjct 334 ATCCTGAATCTTCGCCTTCACATTCTCGATAGTATCTGATGGCTCAACA-TCCAAAGTGA 276 Query 563438 CAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || ||||| ||||| || ||||| || ||||| Sbjct 275 TGGTCTTTCCAGTCAGAGTCTTCACGAAGATCTGCAT 239 >seq1860 Length=3396 Score = 86.0 bits (94), Expect = 5e-11 Identities = 99/131 (76%), Gaps = 2/131 (2%) Strand=Plus/Minus Query 390911 TTCTTTGGATATAACCAGTGTCTGCAGTTTTAATTGCAGTATTAATAATACCTTCTCTTC 390970 ||||||| ||||| ||||| ||||||||||| | |||||||| | || |||||||||| Sbjct 3034 TTCTTTGCATATATCCAGTTTCTGCAGTTTTTACTGCAGTATCTACAAGTCCTTCTCTTC 2975 Query 390971 CTGCCATAACTTGGAAGAAAAATTCCATAGGATTGAGTCCA-GAAATAAATGATCCAAAA 391029 ||| |||| || ||||| ||||| ||||| | |||| ||| ||| || || Sbjct 2974 CTGACATAGTATGAAAGAAGAATTCATCAGGATCTAATCCATTAAAGAAAGAATTAGCAA 2915 Query 391030 CAAAATCCTCT 391040 | ||||||||| Sbjct 2914 C-AAATCCTCT 2905 >seq430 Length=34874 Score = 86.0 bits (94), Expect = 5e-11 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 930654 AAAGTATTAATTGATTTTTCTTCACCAAATATTGCCAAAGAAATGCATATTGGACATTTG 930713 |||||||| | |||||||| ||||||||| |||| ||||||||||| | || ||| | Sbjct 30038 AAAGTATTGGTAGATTTTTCATCACCAAATGTTGCAAAAGAAATGCACGTCGGTCATCTA 29979 Query 930714 CGTTCTACCATTATTGGAGAATCTTTATGT 930743 || || || ||||||||||||||| | ||| Sbjct 29978 CGATCAACTATTATTGGAGAATCTATTTGT 29949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029107519606360