Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20maxima_20[genbank_20GCA_5F000499605.1_202013-11-06] 3,564 sequences; 45,975,062 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq648 277 2e-69 seq655 206 3e-48 seq2330 159 5e-34 seq3112 141 1e-28 seq3296 87.8 2e-12 >seq648 Length=64315 Score = 277 bits (306), Expect = 2e-69 Identities = 479/690 (69%), Gaps = 12/690 (2%) Strand=Plus/Minus Query 195305 GGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGTGTAGAG 195364 ||||| ||||| || || || || |||||||| ||||||||| | |||||| |||||||| Sbjct 2084 GGTATAGATTTGGGTACAACATATTCATGTGTAGGTGTATGGAAGAATGATGGTGTAGAG 2025 Query 195365 ATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATAAT 195424 || || | ||||| ||||| || |||||||| || || || || || ||||| |||| Sbjct 2024 ATAATAGCAAATGATCAAGGTAATCGTACAACCCCTTCTTATGTAGCATTTACGGATACA 1965 Query 195425 GAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTGTC 195484 || | | || || ||||| ||||| |||||| ||| | ||| || ||||| || Sbjct 1964 GAGAGATTAGTAGGGGATGCAGCAAAGAATCAGGTAGCAAGGAATCCAGAGAATACAGTA 1905 Query 195485 TTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATATA 195544 ||||| || || | | || ||| | |||| | ||| || || | || || Sbjct 1904 TTTGATGCAAAAAGGTTGATAGGTAGGAAGTATGACGATCCAGCTGTACAGGCAGACATG 1845 Query 195545 AAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGA---TAAGCCTATGATTAATGTT 195601 ||| | ||| | | | ||||| || | | | ||| || | || | || Sbjct 1844 AAGCATTGGCCATTTA---TTGTTAAGGGAGGACCAGGAGGTAAACCATTAATAGAAGTA 1788 Query 195602 GAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATT 195661 | | || || |||||| |||| ||| || || || | ||||| || || Sbjct 1787 AATTACCAAGGAATAAAGAAAACATTTCATCCTGAGGAGATAAGTGCCATGGTATTAATG 1728 Query 195662 AAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721 ||||||||||||| ||| ||| || || |||||| | ||||| ||||| | || Sbjct 1727 AAGATGAAGGAGATTGCTGAACAATTTATAGGTAAAGAAATAAAAGAAGCAGTAATAACA 1668 Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781 |||||||| ||||| | ||||||||| ||||||| ||||| || || | | |||| || Sbjct 1667 GTACCTGCATACTTTAATGATTCACAGAGACAGGCAACAAAAGATGCAGGTACTATAGCA 1608 Query 195782 GGTCTAAACTGTCTTA-GAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCT 195840 || |||| ||| ||| | || || ||||| |||||||| || ||||| || ||||| | Sbjct 1607 GGATTAAA-TGTATTACGTATAATAAATGAGCCAACAGCAGCAGCAATAGCCTATGGGTT 1549 Query 195841 GGACAAGAACAAGGACGAAGATAAA--AATGTATTGATCTTTGATCTCGGTGGTGGTACG 195898 ||| ||||| |||| | || | | ||||| | ||||||||| | || || || || Sbjct 1548 GGATAAGAAG--GGACAAGGAGAGATGAATGTTCTTATCTTTGATATGGGGGGAGGGACC 1491 Query 195899 TTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGT 195958 ||||||||||| | || | ||| || | ||| || || || || |||||||| || || Sbjct 1490 TTTGATGTCTCCTTGCTTACTATAGAGGATGGCATCTTTGAGGTCAAGGCTACAGCAGGA 1431 Query 195959 GATACTCATCTAGGTGGTGAAGATTTCGAT 195988 ||||| |||||||| || ||||| || ||| Sbjct 1430 GATACACATCTAGGGGGAGAAGACTTTGAT 1401 Score = 212 bits (234), Expect = 8e-50 Identities = 383/560 (68%), Gaps = 0/560 (0%) Strand=Plus/Minus Query 196373 ATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGT 196432 || || || ||||| || |||||||||||||| || || ||||| ||||| || ||| Sbjct 1013 ATTAATCCTGATGAGGCTGTTGCTTATGGTGCAGCTGTACAGGCAGCTATACTAAAAGGA 954 Query 196433 GTTGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGT 196492 || | | || | || |||||| | | || | |||||||| || |||| | || Sbjct 953 GTAAATAGTACACAAGTACAAGATTTATTATTATTAGATGTTGCTCCTTTATCATTAGGA 894 Query 196493 CTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACT 196552 || || ||||| || || || ||||| ||| | || || ||||| ||||| || || || Sbjct 893 CTAGAGACAGCAGGAGGAGTAATGACAAAATTAATAGAGAGGAATACAACAATACCAACA 834 Query 196553 AAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTA 196612 || || ||| | || |||| ||| | |||||||| |||||||| | |||||| || Sbjct 833 AAAAAATCGCAAATATTCACAACATATGCAGATAATCAGCCAGGTGTACTTATTCAGGTG 774 Query 196613 TATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTTTCGATTTGACG 196672 ||||| || || | | | |||||||| || |||| |||| ||| || | Sbjct 773 TATGAGGGGGAGAGGGCAATGACTAAGGATAATAATTTACTAGGAAAGTTCCATCTAGAT 714 Query 196673 GGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCA 196732 || || || ||||||| ||||| || ||||| || | ||| ||| |||||||| || Sbjct 713 GGTATACCTCCTGCACCTAGAGGAGTACCACAAATAGAGGTTACCTTTGATATAGATGCC 654 Query 196733 AATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTG 196792 ||||| ||| | || || || ||| || || | | || ||| | | | || Sbjct 653 AATGGTATTATGAATGTTACTGCTACAGAGAAAAATACAGGAAAAAGTAACCAAATAACT 594 Query 196793 ATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATGCG 196852 ||||| ||||| ||||| | ||| | ||| |||||| || | |||||| || || Sbjct 593 ATTACTAATGATAAGGGTAGACTTAGTCAGGGGGAAATAGATAGAATGGTTGCTGAGGCA 534 Query 196853 GAAAAGTACAGGGAAGAAGACGAGGTATATGAGAAACAGATGAAAGCTATAAATGATCTA 196912 |||||||| | || ||| || |||| || | || ||| | || | |||| ||||| Sbjct 533 GAAAAGTATAAGGCAGAGGATGAGGCTAATAAACAAAGGATAGAGGCAAAAAATAATCTA 474 Query 196913 GAAAATTCTACTTATAGTAT 196932 || |||| | ||||||||| Sbjct 473 GAGAATTATTGTTATAGTAT 454 >seq655 Length=63591 Score = 206 bits (228), Expect = 3e-48 Identities = 446/661 (67%), Gaps = 17/661 (3%) Strand=Plus/Plus Query 195302 ATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGG--TGTATGGCAAAATGATCGTG 195359 |||||||| ||||| || || || ||||| || ||||| ||||| | | | | |||| Sbjct 60744 ATTGGTATTGATTTGGGTACGACATACTCGTGCGTTGGGGTGTATAG--ACAGGGACGTG 60801 Query 195360 TAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAG 195419 |||| || || || ||||| |||||||| |||| ||||| || || | ||| | | Sbjct 60802 TAGATATAATACCTAATGATCAAGGAAATCGTATTACTCCTAGTTATGTATCTTTTGCTG 60861 Query 195420 ATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATA 195479 || |||| | | | ||||| || ||||| || || |||| | ||||| | |||| Sbjct 60862 ATGATGAGAGACGTATAGGAGAAGCAGCAAAGAACGAGGCAGCAAATAACCCAACAAATA 60921 Query 195480 CTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACG 195539 | | ||||| | || ||||| || || | | ||| || || |||| ||| | Sbjct 60922 CAATATTTGATGTAAAACGTCTAATAGGGAGAAGATTTAATGAGAAAGAAGTACAAA--G 60979 Query 195540 ATATAAAGGACTGGT--CTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAA 195597 | |||||| | | | ||||| | || || | | || ||| ||| || Sbjct 60980 AGATAAAGAATTACTTCCTTATAATATTATTAA---TAAAGATGGTAAACCTTATATACG 61036 Query 195598 TGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTT 195657 |||| || | || | ||| |||| || || || ||| | || ||||||| || Sbjct 61037 TGTTATGGTTAAGGGACAACCTAAAGAATTAGCACCTGAGGAAGTATCTGCTATGGTCTT 61096 Query 195658 GATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGT 195717 ||| |||||||| ||| || || | |||||| || || |||| ||||| Sbjct 61097 AGGTAAAATGAAGGAAGTTGCAGAGAATTATCTTGGTAAAGAAGTTAAGAATGCTGTTGT 61156 Query 195718 GACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTAT 195777 ||||| ||||| ||||| | |||| ||||| |||| || ||||| ||||| | |||||| Sbjct 61157 TACTGTTCCTGCATACTTTAATGATGCACAAAGACAAGCAACAAAAGACGCAGGTGCTAT 61216 Query 195778 TGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGG 195837 ||| ||||| || | || | ||||| |||||||| || || ||||| |||||||| || Sbjct 61217 TGCAGGTCTTAATGTTATTCGTATTATTAATGAACCTACTGCTGCTGCTATTGCTTACGG 61276 Query 195838 TCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTAC 195897 ||| || || || |||||| || | | | | ||| ||||| ||||||||||| Sbjct 61277 TCTTGATAAAAAA---GACGAA---AAGACTATCCTTGTCTACGATCTTGGTGGTGGTAC 61330 Query 195898 GTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGG 195957 |||||||| || | || |||||| ||| |||||||||| | || ||| | || Sbjct 61331 CTTTGATGTATCCGTCCTTGTTATTGACAACGGTGTATTCGAAGTCCATGCAACTTCAGG 61390 Query 195958 T 195958 | Sbjct 61391 T 61391 Score = 147 bits (162), Expect = 3e-30 Identities = 312/467 (67%), Gaps = 13/467 (3%) Strand=Plus/Plus Query 196149 TTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTGAAGAGTTAAACTCTG 196208 ||||||| ||||||| ||| | || |||||| ||||| || || || | | Sbjct 61918 TTGACGGCGAGGACTTCTCCGAAACCCTCACTCGTGCAAAGTTTGAGGAATTGAATGCCG 61977 Query 196209 ATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGTGACGCAAAGATGGATA 196268 |||| || |||| || |||||||| ||||||| ||| || ||| | | | | Sbjct 61978 ATTTATTCCAGAAGACATTGAAACCTGTTAAACAAGTTCTTGAAGATGCAGACTTAAAGA 62037 Query 196269 AGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAAC 196328 | || || | || |||||||| ||||| || || ||||| |||||||| ||||| |||| Sbjct 62038 AATCACAGATAGACGAAATTGTTCTTGTTGGTGGTTCAACACGTATTCCTAAGATCCAAC 62097 Query 196329 AGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAACGATCAACCCGGATGAAG 196388 | | || ||||| || |||||| |||| | || || || ||||||| Sbjct 62098 AACTTATTAAGGAATTCTTTAACGGTAAAGAGCCTAACAGAGGAATTAATCCTGATGAAG 62157 Query 196389 CAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGTTGACAATAATAACG 196448 | |||||||||||||| || || || || | ||| | ||||| | || | Sbjct 62158 CCGTTGCTTATGGTGCAGCTGTACAAGCAGGTATCTTATCAGG-----------AGAAGG 62206 Query 196449 T--CCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCTTGAAACAGCGGG 196506 | |||||| | | ||||||||||| | || | | || ||| |||| ||||| || Sbjct 62207 TACACAAGATATGGTCTTACTTGATGTTACTCCTCTTACTCTTGGTATTGAGACAGCTGG 62266 Query 196507 TGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTAAGAAGGAACAAGT 196566 ||||| ||| ||||| ||||| | | ||| || |||||| || |||||| |||| Sbjct 62267 AGGTGTCATGGCTAAAGTTATTAACAAGAATACCGTTATTCCCACCAAGAAGACACAAAC 62326 Query 196567 CTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTAT 196613 || || || || || || || || | | ||| | ||||| |||| Sbjct 62327 TTTCTCTACTTACTCTGACAACCAGTCCGCTGTCCTCATTCAGGTAT 62373 >seq2330 Length=2393 Score = 159 bits (176), Expect = 5e-34 Identities = 157/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||| || || |||||||| || ||||| | || |||||| | ||| Sbjct 239 ATGCAGATCTTCGTGAAGACTCTGACTGGAAAGACCATCACTTTGGATGTTGAGCCATCA 298 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || ||||| || | || || |||||||| |||||||| || ||||| || |||||| Sbjct 299 GATACTATCGAGAATGTGAAGGCGAAGATTCAGGATAAGGAGGGTATTCCTCCTGATCAG 358 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || ||||| || || || ||||| || ||||| | || || | ||||||||| Sbjct 359 CAGCGTCTCATTTTCGCCGGCAAGCAGCTGGAGGATGGCAGGACGCTTTCCGATTACAAC 418 Query 172042 GTTCAAAAGGAGTCTACTCTACA 172064 |||| ||||||||||| || || Sbjct 419 ATTCAGAAGGAGTCTACCCTTCA 441 Score = 150 bits (166), Expect = 2e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||| || || |||||||| || ||||| | || || || | ||| Sbjct 11 ATGCAGATCTTCGTGAAGACTCTGACTGGAAAGACCATCACTTTGGATGTCGAACCATCA 70 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || ||||| || | || || |||||||| |||||||| || ||||| || |||||| Sbjct 71 GATACGATCGAGAATGTGAAGGCGAAGATTCAGGATAAGGAGGGTATTCCTCCTGATCAG 130 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || ||||| || || || ||||| || ||||| | || || | ||||||||| Sbjct 131 CAGCGTCTCATTTTCGCCGGCAAGCAGCTGGAGGATGGCAGGACGCTTTCCGATTACAAC 190 Query 172042 GTTCAAAAGGAGTCTACTCTACA 172064 |||| ||||||||||| || || Sbjct 191 ATTCAGAAGGAGTCTACCCTTCA 213 >seq3112 Length=30853 Score = 141 bits (156), Expect = 1e-28 Identities = 126/158 (80%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||| || || |||||||| || ||||| | || |||||| | ||| Sbjct 30680 ATGCAGATCTTCGTGAAGACTCTGACTGGAAAGACCATCACTTTGGATGTTGAGCCATCA 30739 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| ||| | || || |||||||| |||||||| || ||||| ||||||||| Sbjct 30740 GACACCATCGAAAACGTAAAGGCGAAGATTCAGGATAAGGAGGGTATTCCTCCCGATCAG 30799 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGG 172019 || || || ||||| || || || ||||| || ||||| Sbjct 30800 CAGCGTCTCATTTTCGCCGGCAAGCAGCTGGAGGATGG 30837 >seq3296 Length=20226 Score = 87.8 bits (96), Expect = 2e-12 Identities = 129/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 60520 CCGGGAAGTAGACCCCGCTTCTTTAACCAATATACAGCACAGAACGAACCACTGAAAAAG 60579 ||||| | ||||| | ||| || | |||| ||| |||||||| ||||| ||||| Sbjct 564 CCGGGCATAAGACCTCTCTTTTTAAGCCAAAATATGGCACAGAAGGAACCGGAGAAAAGA 623 Query 60580 ATACCCTCTACACACGCA-AACGCAAAAAGACGTTCAGCAAATGGTCTAGATTTGTCAAA 60638 || ||||||||||| ||| || |||| |||||| |||||||| | | | | ||||| | Sbjct 624 ATTCCCTCTACACA-GCAGAAAGCAACAAGACGCTCAGCAAAAGATTTTGTTTTGTTTAT 682 Query 60639 CCATTTCATGGCCCATTCAGCCTTTCGTTCGATACAAGGGATTGTTTGAATAGCTTGAAA 60698 |||||| |||||| | ||||| | | | |||||| | |||||||| | ||| Sbjct 683 CCATTTTGCTGCCCATGCTGCCTTAACAGCAACAGCAGGGATATTATGAATAGCATTAAA 742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657833092230080