Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20maxima_20[genbank_20GCA_5F000499605.1_202013-11-06] 3,564 sequences; 45,975,062 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq2330 100 3e-16 seq3112 82.4 7e-11 >seq2330 Length=2393 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || | || || ||| | | Sbjct 11 ATGCAGATCTTCGTGAAGACTCTGACTGGAAAGACCATCACTTTGGATGTCGAACCATCA 70 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || ||||| || || || || || || ||||| ||||| Sbjct 71 GATACGATCGAGAATGTGAAGGCGAAGATTCAGGATAAGGAGGGTATTCCTCCTGATCAG 130 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | || || ||||| || |||||||||||| || | | || ||||| ||| Sbjct 131 CAGCGTCTCATTTTCGCCGGCAAGCAGCTGGAGGATGGCAGGACGCTTTCCGATTACAAC 190 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| ||||| || || || || |||||| |||| ||| | || ||| Sbjct 191 ATTCAGAAGGAGTCTACCCTTCATTTGGTGCTGCGTTTGAGAGGTGGC 238 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || | || || || |||| | Sbjct 239 ATGCAGATCTTCGTGAAGACTCTGACTGGAAAGACCATCACTTTGGATGTTGA-GCCATC 297 Query 24764 -GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || | || || ||||| || || || || || || ||||| ||||| Sbjct 298 AGATACTATCGAGAATGTGAAGGCGAAGATTCAGGATAAGGAGGGTATTCCTCCTGATCA 357 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| | || || ||||| || |||||||||||| || | | || ||||| || Sbjct 358 GCAGCGTCTCATTTTCGCCGGCAAGCAGCTGGAGGATGGCAGGACGCTTTCCGATTACAA 417 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 |||||| ||||| || || || || |||||| |||| ||| | || ||| Sbjct 418 CATTCAGAAGGAGTCTACCCTTCATTTGGTGCTGCGTTTGAGAGGCGGC 466 >seq3112 Length=30853 Score = 82.4 bits (90), Expect = 7e-11 Identities = 114/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA-C 24762 ||||||||||| | || || || || || || || || || | || || | ||||| | Sbjct 30680 ATGCAGATCTTCGTGAAGACTCTGACTGGAAAGACCATCACTTTGGATGTTG-AGCCATC 30738 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | |||| ||||| ||||| || || || || || || ||||||||||| Sbjct 30739 AGACACCATCGAAAACGTAAAGGCGAAGATTCAGGATAAGGAGGGTATTCCTCCCGATCA 30798 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 || ||| | || || ||||| || |||||||||||| Sbjct 30799 GCAGCGTCTCATTTTCGCCGGCAAGCAGCTGGAGGAT 30835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449877557061920