Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20maxima_20[genbank_20GCA_5F000499605.1_202013-11-06] 3,564 sequences; 45,975,062 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq648 423 1e-112 seq655 232 5e-55 seq430 93.3 3e-13 >seq648 Length=64315 Score = 423 bits (468), Expect = 1e-112 Identities = 1017/1517 (67%), Gaps = 34/1517 (2%) Strand=Plus/Plus Query 281377 ATTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATT 281436 || |||||||||||| || | || ||| ||| ||| || | ||||| ||||| Sbjct 582 ATCATTAGTAATAGTTATTTGGTTACTTTTTCCTGTATTTTTCTCTGTAGCAGTAACATT 641 Query 281437 AAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGC 281496 | ||||||||||||||| | |||||| || || || ||||| || || ||||| | || Sbjct 642 CATAATACCATTGGCATCTATATCAAAGGTAACCTCTATTTGTGGTACTCCTCTAGGTGC 701 Query 281497 AGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCG 281556 ||| || || || || | || || |||| || ||||||||| ||||| | | | Sbjct 702 AGGAGGTATACCATCTAGATGGAACTTTCCTAGTAAATTATTATCCTTAGTCATTGCCCT 761 Query 281557 TTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATAC 281616 || ||||| | | || ||| || | | |||||||||| ||| ||||| |||| Sbjct 762 CTCCCCCTCATACACCTGAATAAGTACACCTGGCTGATTATCTGCATATGTTGTGAATAT 821 Query 281617 TCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACC 281676 | |||||||| || |||||||| || || || || | || ||||| | || || Sbjct 822 TTGCGATTTTTTTGTTGGTATTGTTGTATTCCTCTCTATTAATTTTGTCATTACTCCTCC 881 Query 281677 AGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTT 281736 ||||| |||| || | || | ||||| ||||| | || | | || ||| | || Sbjct 882 TGCTGTCTCTAGTCCTAATGATAAAGGAGCAACATCTAATAATAATAAATCTTGTACTTG 941 Query 281737 TTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTC 281796 | | | || || || |||||||| || | ||| |||||||| |||||||| || Sbjct 942 TGTACTATTTACTCCTTTTAGTATAGCTGCCTGTACAGCTGCACCATAAGCAACAGCCTC 1001 Query 281797 ATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCT 281856 ||||||||||| || | | | ||| |||||||| || || | | | ||||||| Sbjct 1002 ATCAGGATTAATAGATCTACATGGTTCCTTACCATTAAAGAATTCTTGTATAAGTTGTTG 1061 Query 281857 TACCTTAGGAATACGAGATGAT-CCTCCAACTAATACAATTTCATGCACCTGTGATTTAT 281915 || ||| || || | | || | ||||| || | ||| | ||||| || |||| Sbjct 1062 TATCTTGGGTATTCTTG-TGCTCCCTCCTACCAGTACTACCTCATGTACACTCCTCTTAT 1120 Query 281916 CCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCT-CTAAACAAGTCT 281974 | | || ||| || |||||||| |||||| |||| || | | || | || Sbjct 1121 CTATATTACTATCTTTTAGTACTTTTTCTACGGGTATAAGA-GAGTTACGGAAATAATCC 1179 Query 281975 GAACAAAGTTCTTCGAATTTAGCTCTAG-TAAGAGTGACATTATAATCAATTCCTTCGAA 282033 ||| | ||| |||||| |||| |||| |||| | |||| |||||||| || || | Sbjct 1180 ATACATAATTCCTCGAATCTAGCCCTAGATAAG-GAGACAGAGTAATCAATACCCTCATA 1238 Query 282034 CAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTC 282093 ||| ||||| || || |||| ||| || | | ||||| | || || | || Sbjct 1239 TAAACTATCAATCTCTATAGTAGCTTGTGTACTACTACTTAGTGTCCTCTTTGCTCTCTC 1298 Query 282094 ACATGCTGTCCTTAGTCTTCGTAA-GGCTTTTGCTGATTGATTCAAATCT--GTTTTATA 282150 || ||| | |||||| | ||| | | | | ||| || | || | | ||| Sbjct 1299 GCACTGTGTACGTAGTCTCCTTAATGCCCTACTATTATTACTTGGATCCTTGGATCTATT 1358 Query 282151 TTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCC 282210 |||||||| ||||||| | ||| | ||| | | ||||||||| ||||| || || Sbjct 1359 CTTTCTCTTAAAATCTTGTATACAAAAATCTACTAATCTATTATCAAAGTCTTCTCCCCC 1418 Query 282211 CAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAG--ACAAA 282268 | | |||| ||||| ||||| | || | || | ||||| || | || | || Sbjct 1419 TAGATGTGTATCTCCTGCTGTAGCCTTGACCTCAAAGATGCCATCCTCTATAGTAAGCAA 1478 Query 282269 AGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCT--TTGT 282326 ||| |||||| ||| || || ||||||||||| ||||| |||||||| ||| |||| Sbjct 1479 GGAG--ACATCAAAGGTCCCTCCCCCCATATCAAAGATAAGAACATTCATCTCTCCTTGT 1536 Query 282327 CTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCA 282386 | || ||||| | ||||| || | || || || ||||| ||||| || || | | Sbjct 1537 C--CCTTCTTATCCAACCCATAGGCTATTGCTGCTGCTGTTGGCTCATTTATTATACGTA 1594 Query 282387 AAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAA 282446 | ||||| | || || || | ||||||||||| || || ||||| |||||||| |||| Sbjct 1595 ATACATTTAATCCTGCTATAGTACCTGCATCTTTTGTTGCCTGTCTCTGTGAATCATTAA 1654 Query 282447 AATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCT-TGCT 282505 | |||||||| || || || || || ||| ||| |||||| || ||| || | | || Sbjct 1655 AGTATGCAGGTACTGTTATTACTGCTTCTTTTATTTCTTTACCTATA-AATTGTTCAGCA 1713 Query 282506 GTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGA--GAATATTGCTTGG 282563 | | ||||| || |||| | ||| | || | || ||| ||| || | Sbjct 1714 ATCTCCTTCATCTTCATTAATACCATGGCACTTATCTCCTCAGGATGAAATGTTTTCTTT 1773 Query 282564 ATTCATTTTGATATGATACTTCAAAATATGGTTTA------TTACCAACATTAATAACTT 282617 |||| ||| || |||||| | |||||||| || | |||| || Sbjct 1774 ATTC--CTTGGTAATTTACTTCTATTAATGGTTTACCTCCTGGTCCTCCCTTAACAA--- 1828 Query 282618 TAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTA 282677 |||||||||||| ||||| |||| || ||| | | || | | | | ||||| || | Sbjct 1829 TAAATGGCCAATGCTTCATGTCTGCCTGTACAGCTGGATCGTCATACTTCCTACCTATCA 1888 Query 282678 ATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCAT 282737 | | |||||||||||| | ||||| |||||| ||| | |||| || ||||||| Sbjct 1889 ACCTTTTTGCATCAAATACTGTATTCTCTGGATTCCTTGCTACCTGATTCTTTGCTGCAT 1948 Query 282738 CTCCAATCAGATGT-TCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCT 282796 | || | | || | ||||| || ||||||| ||||| || || ||||| ||||||||| Sbjct 1949 CCCCTA-CTAATCTCTCTGTATCCGTAAATGCTACATAAGAAGGGGTTGTACGATTACCT 2007 Query 282797 TGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTT 282856 |||||||| || || || || || | |||| | ||||||||||||||| | | ||| Sbjct 2008 TGATCATTTGCTATTATCTCTACACCATCATTCTTCCATACACCTACACATGAATATGTT 2067 Query 282857 GTTCCTAAATCAATACC 282873 || || ||||| ||||| Sbjct 2068 GTACCCAAATCTATACC 2084 >seq655 Length=63591 Score = 232 bits (256), Expect = 5e-55 Identities = 425/610 (70%), Gaps = 22/610 (4%) Strand=Plus/Minus Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 282334 |||||| ||| |||||||| | ||| | | ||| | | || |||| ||||| || Sbjct 61339 ACATCAAAGGTACCACCACCAAGATCGTAGACAAGGATAGTCTTTTC---GTCTT---TT 61286 Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 ||||||||||| || |||| |||||||||||| |||||||||||||| | | ||||||| Sbjct 61285 TTATCAAGACCGTAAGCAATAGCAGCAGCAGTAGGTTCATTAATAATACGAATAACATTA 61226 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 ||||| ||||| ||||| ||||| || ||||||||||||| ||| ||||| |||||| Sbjct 61225 AGACCTGCAATAGCACCTGCGTCTTTTGTTGCTTGTCTTTGTGCATCATTAAAGTATGCA 61166 Query 282455 GGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTC 282514 |||||||||| ||| |||| | |||||||| |||| |||| ||| || ||| Sbjct 61165 GGAACAGTAACAACAGCATTCTTAACTTCTTTACCAAGATAATTCTCTGCAACTTCCTTC 61106 Query 282515 ATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGAT--TCATTTT 282572 ||||||| ||| | ||| | || | || || || | ||| || | | || || Sbjct 61105 ATTTTACCTAAGACCATAGCAGATACTTCCTCAGGTGCTAATTCTTTAGGTTGTCCCTTA 61046 Query 282573 GATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAATATT 282632 || | || | | ||| |||||| | | |||||||| ||| | || | || | Sbjct 61045 ACCATAACACGT--ATATAAGGTTTACCATCTTTATTAATAATATTATAAGG-AAGTAAT 60989 Query 282633 TC-ATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCA 282691 || ||||| ||| || || |||||||| ||| || |||| |||||| ||||| Sbjct 60988 TCTTTATCTCTTTGTACTTCTTTCTCATTAAATCTTCTCCCTATTAGACGTTTTACATCA 60929 Query 282692 AAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGT 282751 || || ||||| ||||| ||| ||| || | | || ||||| ||||| || | || Sbjct 60928 AATATTGTATTTGTTGGGTTATTTGCTGCCTCGTTCTTTGCTGCTTCTCCTAT---ACGT 60872 Query 282752 -TCT-GTC-TCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCA 282808 ||| || || | ||| || ||||| ||||| | ||||| ||||||||||| | Sbjct 60871 CTCTCATCATCAGCAAAAGATACATAACTAGGAGTAATACGATTTCCTTGATCATTAGGT 60812 Query 282809 ATAATTTCAACTTTACCATTTTGCCATACA--CCTACACAACTAAAAGTTGTTCCTAAAT 282866 || || || || || | | | ||||| || || || | || || || |||| Sbjct 60811 ATTATATCTACACGTCCCTGT--CTATACACCCCAACGCACGAGTATGTCGTACCCAAAT 60754 Query 282867 CAATACCAAT 282876 |||||||||| Sbjct 60753 CAATACCAAT 60744 Score = 131 bits (144), Expect = 1e-24 Identities = 212/302 (70%), Gaps = 15/302 (5%) Strand=Plus/Minus Query 281653 AATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATC 281712 ||||| || | ||| | ||| |||||||| || | |||||||| ||||||||| ||||| Sbjct 62288 AATAACTTTAGCCATGACACCTCCAGCTGTCTCAATACCAAGAGTAAGAGGAGTAACATC 62229 Query 281713 AACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAAT 281772 || || ||| |||| ||| ||| | | | |||| || ||||||| | Sbjct 62228 AAGTAAGACCATATCTTGTGTACCTTCTCCTGAT--------AAGA-TACCTGCTTGTAC 62178 Query 281773 AGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTT--TCATTTA-GTTTTTTACC 281829 ||| |||||||| ||||| |||||||||||||||| || || ||| | | |||||| Sbjct 62177 AGCTGCACCATAAGCAACGGCTTCATCAGGATTAA---TTCCTCTGTTAGGCTCTTTACC 62121 Query 281830 ATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAA 281889 || || || | || ||||||| | |||||||||||| | ||| || ||||| | Sbjct 62120 GTTAAAGAATTCCTTAATAAGTTGTTGGATCTTAGGAATACGTGTTGAACCACCAACAAG 62061 Query 281890 TACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGG 281949 |||||||| | | ||||||||| | | | || ||| | ||||| || ||| || Sbjct 62060 AACAATTTCGTCTATCTGTGATTTCTTTAAGTCTGCATCTTCAAGAACTTGTTTAACAGG 62001 Query 281950 TT 281951 || Sbjct 62000 TT 61999 Score = 95.1 bits (104), Expect = 9e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 86118 ACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGC 86177 |||||| |||| ||| || ||||| ||||||||||| || || ||||| | ||| || Sbjct 61277 ACCGTAAGCAATAGCAGCAGCAGTAGGTTCATTAATAATACGAATAACATTAAGACCTGC 61218 Query 86178 AATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGT 86237 ||| | | | || ||||||||||| ||||| |||||||| ||||| || ||||| Sbjct 61217 AATAGCACCTGCGTCTTTTGTTGCTTGTCTTTGTGCATCATTAAAGTATGCAGGAACAGT 61158 Query 86238 AATAACTGCTTTATTAA 86254 || ||| || || |||| Sbjct 61157 AACAACAGCATTCTTAA 61141 >seq430 Length=34874 Score = 93.3 bits (102), Expect = 3e-13 Identities = 76/91 (84%), Gaps = 1/91 (1%) Strand=Plus/Minus Query 637117 AAAATTATTG-TCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTT 637175 |||| ||||| | |||| ||| || |||||| |||| ||||||||||| | || ||| | Sbjct 30039 AAAAGTATTGGTAGATTTTTCATCACCAAATGTTGCAAAAGAAATGCACGTCGGTCATCT 29980 Query 637176 AAGATCAACTATTATTGGTGAATCTATTTGT 637206 | |||||||||||||||| |||||||||||| Sbjct 29979 ACGATCAACTATTATTGGAGAATCTATTTGT 29949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740455422661464