Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20maxima_20[genbank_20GCA_5F000499605.1_202013-11-06] 3,564 sequences; 45,975,062 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq2330 116 4e-21 seq3112 105 6e-18 seq3187 87.8 2e-12 >seq2330 Length=2393 Score = 116 bits (128), Expect = 4e-21 Identities = 150/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | ||| ||||| ||||| || ||||||||| | ||| ||||| ||| Sbjct 216 AAATGAAGGGTAGACTCCTTCTGAATGTTGTAATCGGAAAGCGTCCTGCCATCCTCCAGC 157 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| ||| ||||||| |||||||| || ||||| || || ||||| || ||| Sbjct 156 TGCTTGCCGGCGAAAATGAGACGCTGCTGATCAGGAGGAATACCCTCCTTATCCTGAATC 97 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||| | | ||| | ||| || | || || || || | |||| ||| || || Sbjct 96 TTCGCCTTCACATTCTCGATCGTATCTGATGGTTCGACATCCAAAGTGATGGTCTTTCCA 37 Query 133635 GTCAGAGTTTTTACGAAAATCTGCATG 133661 |||||||| || ||||| ||||||||| Sbjct 36 GTCAGAGTCTTCACGAAGATCTGCATG 10 Score = 116 bits (128), Expect = 4e-21 Identities = 150/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | ||| ||||| ||||| || ||||||||| | ||| ||||| ||| Sbjct 444 AAATGAAGGGTAGACTCCTTCTGAATGTTGTAATCGGAAAGCGTCCTGCCATCCTCCAGC 385 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| ||| ||||||| |||||||| || ||||| || || ||||| || ||| Sbjct 384 TGCTTGCCGGCGAAAATGAGACGCTGCTGATCAGGAGGAATACCCTCCTTATCCTGAATC 325 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||| | | ||| | || || | ||||| || || | |||| ||| || || Sbjct 324 TTCGCCTTCACATTCTCGATAGTATCTGATGGCTCAACATCCAAAGTGATGGTCTTTCCA 265 Query 133635 GTCAGAGTTTTTACGAAAATCTGCATG 133661 |||||||| || ||||| ||||||||| Sbjct 264 GTCAGAGTCTTCACGAAGATCTGCATG 238 >seq3112 Length=30853 Score = 105 bits (116), Expect = 6e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| ||||||||||| ||| ||||||| |||||||| |||||||| || || ||||| Sbjct 30834 TCCTCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCGGGAGGAATACCCTCCTTA 30775 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||||| ||| | | || | ||||| | ||||| || || | |||| | Sbjct 30774 TCCTGAATCTTCGCCTTTACGTTTTCGATGGTGTCTGATGGCTCAACATCCAAAGTGATG 30715 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 || || || |||||||| || ||||| ||||||||| Sbjct 30714 GTCTTTCCAGTCAGAGTCTTCACGAAGATCTGCATG 30679 >seq3187 Length=81671 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||| || |||||||| || ||| | || || ||||||||||| ||||| || || || || Sbjct 67528 GTCATCAAGCTGCTTTCCAGCGAAGATAAGGCGCTGCTGGTCTGGAGGAATACCCTCTTT 67469 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| ||||| ||| | | || | ||||||| |||||||| || | ||| | Sbjct 67468 GTCCTGAATCTTCGCCTTCACATTTTCGATAGTGTCGGAAGGCTCCACATCAAGGGTAAT 67409 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || ||||| || || || ||||||||||| Sbjct 67408 AGTCTTCCCCGTCAGCGTCTTCACAAAAATCTGCAT 67373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483399263603360