Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20maxima_20[genbank_20GCA_5F000499605.1_202013-11-06] 3,564 sequences; 45,975,062 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1143 107 5e-18 seq1946 102 2e-16 seq1911 87.8 4e-12 seq1860 84.2 5e-11 >seq1143 Length=7562 Score = 107 bits (118), Expect = 5e-18 Identities = 116/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 305323 TGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAA 305382 ||||| || | || ||| | ||||| || |||||||||||||||| |||| ||||| Sbjct 4936 TGATTATGTATTATTTAATCGTCAACCTTCCTTGCATAAAATGTCTATAATGGGTCATAG 4877 Query 305383 AGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAA 305442 ||| | ||||||| || | |||||| |||||||| || | | | | |||||||| Sbjct 4876 AGTAAGAGTATTACCTTACTCAACATTTAGATTAAATTTATCCGTTACTTCTCCTTATAA 4817 Query 305443 TGCGGATTTTGATGGAGATGAAATGAATATGCAT 305476 ||| || |||||||| ||||| |||||| | ||| Sbjct 4816 TGCAGACTTTGATGGTGATGAGATGAATCTACAT 4783 >seq1946 Length=2437 Score = 102 bits (112), Expect = 2e-16 Identities = 133/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 112588 TTATTACACGTAACCTAAATAAAATTATTGACAAAACGACCTATCCAATTCAAAAAGCAA 112647 ||||||| ||| || ||||| |||||||| |||| ||||| || ||| | ||| Sbjct 1271 TTATTACGGATAATCTTAATAATATTATTGATAAAAATTATTATCCTATACAAGAGGCAG 1212 Query 112648 AACATTCTAATAACAAGCATAGACCAATTGGCATTGGCGTACAAGGATTAGCTGATGTAT 112707 || || |||||| || |||||||| || || || || |||||||||||||||||| | Sbjct 1211 AATATAGTAATAAAAAACATAGACCTATAGGTATAGGTGTACAAGGATTAGCTGATTGTT 1152 Query 112708 TTATGATGATGCGAATTCCTTTTGATTCTGACCGTGCTAAATTCTTAAATGAAAAGATTT 112767 || | | | || ||||||||||||| | |||||| ||||| |||| || | Sbjct 1151 TTCTTCTTCTTCGTCTTCCTTTTGATTCACAAGAAGCTAAACAATTAAACAAAAATATCT 1092 Query 112768 TCGA 112771 |||| Sbjct 1091 TCGA 1088 Score = 98.7 bits (108), Expect = 2e-15 Identities = 136/190 (72%), Gaps = 3/190 (2%) Strand=Plus/Minus Query 110724 TATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGG 110780 ||||| ||||||| || || ||||| || ||||| | ||||| ||||| ||| Sbjct 1630 TATGTAGATCAAGGAGGAGGGAAAAGAAAAGGAAGTCTTGCTGTATATCTAGAACCATGG 1571 Query 110781 CATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGA 110840 ||| |||||||||||||||||||||| | | |||||||| || ||||| || Sbjct 1570 CATGCAGATATATTTGAATTCTTAGATATAAGAAAAAATCATGGCAAAGAAGAGATGAGG 1511 Query 110841 GCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAA 110900 ||| | ||| ||||| ||| | ||||| | ||| |||| ||| || | || | ||| Sbjct 1510 GCAAGAGATCTATTTCCTGCTCTATGGATACCTGATCTATTTATGCAAAGAGTATATGAA 1451 Query 110901 AATGGCATGT 110910 ||||| |||| Sbjct 1450 AATGGTATGT 1441 >seq1911 Length=3244 Score = 87.8 bits (96), Expect = 4e-12 Identities = 235/354 (66%), Gaps = 14/354 (4%) Strand=Plus/Minus Query 121304 TCAGCAGGAATAAGAATAAAAGCAGCATCGGCTTGTCCGACGCCTGAAATCATATTCTTA 121363 |||||||||| || || || ||| |||| || || | |||| ||||||||||||| Sbjct 457 TCAGCAGGAACAACAAGAAGAGCTACATCTGCCTGAGAGGTTCCTGTAATCATATTCTTA 398 Query 121364 ATAAAGTCAATATGGCCTGGTGCATCAATAATAGAATAATGATAAGAATCTGTGTAAAAT 121423 ||||| || |||| ||||||||||| |||| | ||||||| | | | ||| | ||| Sbjct 397 ATAAAATCTCTATGTCCTGGTGCATCTATAACTGTATAATGAAAGGTAGGTGTCTCGAAT 338 Query 121424 T-CCTTAGTATTACAATTTACTGTAATTCCGCGCTCACGCTCTTCCTTGTTGTTATCCAT 121482 | || ||| || || || ||| ||||| | ||| | ||| |||| |||||| Sbjct 337 TGCCATAGAGCTA-TATCTATTGTTATTCCTCTCTCCCTCTCCGCCTTTAGCTTATCC-- 281 Query 121483 GTAATAAGCAAATGCAAAACTAGAT-TTGCCGTTTGCGTCGGCAAGTTC-----CTGCAA 121536 |||| | ||||| | || || |||| | | || || || || || Sbjct 280 --AATA--CCCATGCATACTTAAATGATGCCTTACCCATCTCTGAGCTCTCCTTCTCAAA 225 Query 121537 CTTCGCCATCTCACGAGCATTTATGCCTCCCAATTTAAAGATAAGATGACCGGTTGTTGT 121596 ||| | ||| ||| || ||| || || |||||| | || | |||||| || ||||| Sbjct 224 CTTTTCTATCGTACGCTTATCTATACCACCTAATTTATATATTAAATGACCTGTAGTTGT 165 Query 121597 TGACTTTCCCGAGTCAACTTCACCACAGACCACCAAAGATATATGTTGCTTTTC 121650 || || || || || | |||| || |||||| ||||||| ||| || Sbjct 164 AGATTTACCACTATCTACATGACCAATTACAACCAAATTTATATGTGTCTTCTC 111 >seq1860 Length=3396 Score = 84.2 bits (92), Expect = 5e-11 Identities = 117/162 (72%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 305333 CTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTA 305392 || || ||| | ||||| || ||||||| | | ||| ||||| ||||| | ||| | Sbjct 1295 CTATTTAATCGTCAACCTTCTCTGCATAGACAGAGTATAATGGCACATAAGGC--AAGAA 1352 Query 305393 TTATCTGGATTGA--CATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATT 305450 |||| | | | |||| |||| |||| | ||| |||| | ||||||||||| || | Sbjct 1353 TTATGAATAATAATACATTAAGATTTAATGAATGTGTTTGTTCTCCTTATAATGCAGACT 1412 Query 305451 TTGATGGAGATGAAATGAATATGCATGTACCTCAATCAAAGG 305492 ||||||| ||||| |||||| | ||| |||| || || ||| Sbjct 1413 TTGATGGGGATGAGATGAATCTACATCTACCCCAGACACAGG 1454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186758605677004