Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20maxima_20[genbank_20GCA_5F000499605.1_202013-11-06] 3,564 sequences; 45,975,062 total letters Query= NC_026242.1 Length=145704 Score E Sequences producing significant alignments: (Bits) Value seq501 105 6e-18 seq2715 102 8e-17 seq738 100 3e-16 seq3553 98.7 9e-16 seq897 98.7 9e-16 seq1299 96.9 3e-15 seq1835 87.8 2e-12 >seq501 Length=85843 Score = 105 bits (116), Expect = 6e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 ||||| |||||||||||| |||| |||||| |||||||||||||| |||||||||| ||| Sbjct 36457 GCGGGCATGGTCTAGTGGCTATGACGTCTGCTTTACACGCAGAAGATCCCGGGTTCGATC 36516 Query 39838 CCCGGTGCCCGTA 39850 ||||||||||||| Sbjct 36517 CCCGGTGCCCGTA 36529 >seq2715 Length=2708 Score = 102 bits (112), Expect = 8e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 ||||| |||||||||||| |||| |||||| |||||||||| ||| |||||||||| ||| Sbjct 1242 GCGGGCATGGTCTAGTGGCTATGACGTCTGCTTTACACGCACAAGATCCCGGGTTCGATC 1183 Query 39838 CCCGGTGCCCGTAT 39851 |||||||||||||| Sbjct 1182 CCCGGTGCCCGTAT 1169 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 ||||| |||||||||||| |||| |||||| || ||||||||||| |||||||||| ||| Sbjct 492 GCGGGCATGGTCTAGTGGCTATGACGTCTGCTTCACACGCAGAAGATCCCGGGTTCGATC 433 Query 39838 CCCGGTGCCCGTA 39850 ||||||||||||| Sbjct 432 CCCGGTGCCCGTA 420 Score = 98.7 bits (108), Expect = 9e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 ||||| |||||||||||| |||| |||||| | ||||||||||| |||||||||| ||| Sbjct 1807 GCGGGCATGGTCTAGTGGCTATGACGTCTGCCTAACACGCAGAAGATCCCGGGTTCGATC 1748 Query 39838 CCCGGTGCCCGTAT 39851 |||||||||||||| Sbjct 1747 CCCGGTGCCCGTAT 1734 Score = 98.7 bits (108), Expect = 9e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 ||||| |||||||||||| |||| |||||| | ||||||||||| |||||||||| ||| Sbjct 2455 GCGGGCATGGTCTAGTGGCTATGACGTCTGCCTAACACGCAGAAGATCCCGGGTTCGATC 2396 Query 39838 CCCGGTGCCCGTAT 39851 |||||||||||||| Sbjct 2395 CCCGGTGCCCGTAT 2382 >seq738 Length=60764 Score = 100 bits (110), Expect = 3e-16 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 ||||| |||||||||||| |||| |||||| | ||||||||||| |||||||||| ||| Sbjct 51121 GCGGGCATGGTCTAGTGGCTATGACGTCTGCCTAACACGCAGAAGATCCCGGGTTCGATC 51180 Query 39838 CCCGGTGCCCGTATTTCT 39855 ||||||||||||||| || Sbjct 51181 CCCGGTGCCCGTATTGCT 51198 >seq3553 Length=13961 Score = 98.7 bits (108), Expect = 9e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 39779 CGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATCC 39838 |||| |||| |||||||||||| |||||| |||||||||||||| |||||||||| || | Sbjct 9247 CGGGCATGGCCTAGTGGTTATGACGTCTGCTTTACACGCAGAAGATCCCGGGTTCGATGC 9306 Query 39839 CCGGTGCCCGTATT 39852 || ||||||||||| Sbjct 9307 CCCGTGCCCGTATT 9320 Score = 98.7 bits (108), Expect = 9e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 ||||| |||||||||||| |||| |||||| | ||||||||||| |||||||||| ||| Sbjct 13862 GCGGGCATGGTCTAGTGGCTATGACGTCTGCCTAACACGCAGAAGATCCCGGGTTCGATC 13921 Query 39838 CCCGGTGCCCGTAT 39851 |||||||||||||| Sbjct 13922 CCCGGTGCCCGTAT 13935 Score = 91.5 bits (100), Expect = 1e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 ||||| |||||||||||| |||| |||||| || ||||||||| | |||||||||| ||| Sbjct 13225 GCGGGCATGGTCTAGTGGCTATGACGTCTGCTTCACACGCAGACGATCCCGGGTTCGATC 13284 Query 39838 CCCGGTGCCCGTA 39850 |||||| |||||| Sbjct 13285 CCCGGTTCCCGTA 13297 >seq897 Length=10416 Score = 98.7 bits (108), Expect = 9e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 ||||| |||||||||||| |||| |||||| | ||||||||||| |||||||||| ||| Sbjct 10416 GCGGGCATGGTCTAGTGGCTATGACGTCTGCCTAACACGCAGAAGATCCCGGGTTCGATC 10357 Query 39838 CCCGGTGCCCGTAT 39851 |||||||||||||| Sbjct 10356 CCCGGTGCCCGTAT 10343 Score = 96.9 bits (106), Expect = 3e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 ||||| |||||||||||| |||| |||||| | ||||||||||| |||||||||| ||| Sbjct 9776 GCGGGCATGGTCTAGTGGCTATGACGTCTGCCTAACACGCAGAAGATCCCGGGTTCGATC 9717 Query 39838 CCCGGTGCCCGTA 39850 ||||||||||||| Sbjct 9716 CCCGGTGCCCGTA 9704 >seq1299 Length=6184 Score = 96.9 bits (106), Expect = 3e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 ||||| |||||||||||| |||| |||||| | ||||||||||| |||||||||| ||| Sbjct 5685 GCGGGCATGGTCTAGTGGCTATGACGTCTGCCTAACACGCAGAAGATCCCGGGTTCGATC 5744 Query 39838 CCCGGTGCCCGTATTT 39853 ||||||||||||| || Sbjct 5745 CCCGGTGCCCGTACTT 5760 >seq1835 Length=41983 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 39771 CTATCAGGCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGG 39830 ||| ||| |||| |||||||||||| |||| |||||| | ||||||||||| || ||| Sbjct 1657 CTAACAGTCGGGCATGGTCTAGTGGCTATGACGTCTGCCTAACACGCAGAAGCACCAGGG 1716 Query 39831 TTCAATCCCCGGTGCCCGTATTT 39853 ||| || ||| |||||||||||| Sbjct 1717 TTCGATTCCCTGTGCCCGTATTT 1739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 466104034140160