Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20maxima_20[genbank_20GCA_5F000499605.1_202013-11-06] 3,564 sequences; 45,975,062 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1946 107 3e-18 seq270 89.7 7e-13 >seq1946 Length=2437 Score = 107 bits (118), Expect = 3e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 68981 CAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTAT 69040 |||| |||| ||| ||||| ||||| | || || || ||||| || || || | Sbjct 1044 CAGCAAGTTGCATACTAGCCTCGCATGCAGCATAGTATATACACTCGAAGATATTTTTGT 1103 Query 69041 TGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCA 69100 | | | || |||||| | ||| || ||| | | | ||||| ||| ||| || | Sbjct 1104 TTAATTGTTTAGCTTCTTGTGAATCAAAAGGAAGACGAAGAAGAAGAAAACAATCAGCTA 1163 Query 69101 ATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAA 69160 |||| || || || ||||| |||||||||||| | ||||| | ||| || ||| | | Sbjct 1164 ATCCTTGTACACCTATACCTATAGGTCTATGTTTTTTATTACTATATTCTGCCTCTTGTA 1223 Query 69161 TAGGATAATAATTAATATCTATAATTTTATTAAGATT 69197 ||||||||||||| |||| ||||| ||||||||||| Sbjct 1224 TAGGATAATAATTTTTATCAATAATATTATTAAGATT 1260 Score = 96.9 bits (106), Expect = 5e-15 Identities = 125/170 (74%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTT 69654 |||| || |||||||||||| || ||||| ||||| ||| |||||||| | || | Sbjct 1458 ACTCTTTGCATAAATAGATCAGGTATCCATAGAGCAGGAAATAGATCTCTTGCCCTCATC 1517 Query 69655 TCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 69714 ||||| || || ||||||| | | ||| | || || | ||||| | |||||||||| Sbjct 1518 TCTTCTTTGCCATGATTTTTTCTTATATCTAAGAATTCAAATATATCTGCATGCCATGGT 1577 Query 69715 TCTAGATATATCGCCATGAC-TCCCGGTCGTTTATTTCCTCCCTGATCTA 69763 |||||||||| | || ||| ||| || ||| |||||| ||||||| Sbjct 1578 TCTAGATATA-CAGCAAGACTTCCTTTTCTTTTCCCTCCTCCTTGATCTA 1626 Score = 84.2 bits (92), Expect = 3e-11 Identities = 128/180 (71%), Gaps = 7/180 (4%) Strand=Plus/Plus Query 69790 CTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTT 69849 || ||||| || |||| |||||||| | ||||| || || |||||||| ||| || Sbjct 1966 CTAAGCATAGGTATAAGTCCATTAGAATATCCATTAGTACCTCTTATATAACTACCTGTT 2025 Query 69850 GCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACA- 69908 || || |||| ||| ||||||||||| |||||| || |||| |||| ||||| Sbjct 2026 GCTCGTATATCCGTAACAGATAGACCTAATCCTCCAGCAGTTTTGCTTATTAATGCACAT 2085 Query 69909 --ACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCA-TGTTAAGAAGAAA 69965 |||| ||||| | ||||||| ||||| ||| ||| || |||||| || ||| Sbjct 2086 TGACGT---AATGTACTAAATATACCATCTATTGAATCTTCTTGCATTGTTAATAAAAAA 2142 >seq270 Length=46145 Score = 89.7 bits (98), Expect = 7e-13 Identities = 119/162 (73%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 39313 CATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTC 39372 ||||||||| |||||||| || ||||| | | |||| || ||||| ||||| |||| Sbjct 45912 CATAACTCCTGCCTTTTGGTAATCCCCAACTCTTCTCTCAAAGAAATTTGTTTTTCCTTG 45971 Query 39373 CAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCC 39432 || || || | ||||| |||||||| ||||| || ||||| || | |||| ||| Sbjct 45972 TAAAGAAATCATATCCATAAAATCAAAAGGATTTCTTACATTAAATATCTTTTCTCCTCC 46031 Query 39433 TAATTCTGA--AATCAATCTATCTGCAACAAATTCTATGTAT 39472 ||| | | ||| || | ||| |||||||||||||| ||| Sbjct 46032 TAAA-CAAACTAATAAA-CGATCAGCAACAAATTCTATATAT 46071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686878198212960