Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20maxima_20[genbank_20GCA_5F000499605.1_202013-11-06] 3,564 sequences; 45,975,062 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq2330 113 4e-20 seq3112 98.7 8e-16 seq3187 87.8 2e-12 >seq2330 Length=2393 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| || | ||| |||| |||||||| | ||||| || || ||||| ||||| ||| Sbjct 466 GCCGCCTCTCAAACGCAGCACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAATCGGA 407 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | | | | || || ||||| || |||||| ||||||||||||| ||||| || || Sbjct 406 AAGCGTCCTGCCATCCTCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCAGGAGG 347 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAA 27198 | |||||| ||||| ||||| |||| | || | ||| |||| |||| |||| Sbjct 346 AATACCCTCCTTATCCTGAATCTTCGCCTTCACATTCTCGATAGTATCTGATGGC-TCAA 288 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || | ||| || | || || |||||||| ||||| ||||| ||||| Sbjct 287 CATCCAAAGTGATGGTCTTTCCAGTCAGAGTCTTCACGAAGATCTGCAT 239 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || | ||| |||| |||||||| | ||||| || || ||||| ||||| ||| Sbjct 239 TGCCACCTCTCAAACGCAGCACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAATCGG 180 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | | || || ||||| || |||||| ||||||||||||| ||||| || | Sbjct 179 AAAGCGTCCTGCCATCCTCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCAGGAG 120 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | |||||| ||||| ||||| |||| | || | || |||| | ||| | Sbjct 119 GAATACCCTCCTTATCCTGAATCTTCGCCTTCACATTCTCGATCGTATCTGATGGTTCGA 60 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || | ||| || | || || |||||||| ||||| ||||| ||||| Sbjct 59 CATCCAAAGTGATGGTCTTTCCAGTCAGAGTCTTCACGAAGATCTGCAT 11 >seq3112 Length=30853 Score = 98.7 bits (108), Expect = 8e-16 Identities = 117/156 (75%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 || || ||||| || |||||| ||||||||||||| ||||| || || | |||||| ||| Sbjct 30834 TCCTCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCGGGAGGAATACCCTCCTTA 30775 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAACTTCTAGAGTTAT 27211 || ||||| || | | |||| | ||||||| |||| ||||| || | ||| || Sbjct 30774 TCCTGAATCTTCGCCTTTACGTTTTCGATGGTGTCTGATGGC-TCAACATCCAAAGTGAT 30716 Query 27212 AGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || |||||||| ||||| ||||| ||||| Sbjct 30715 GGTCTTTCCAGTCAGAGTCTTCACGAAGATCTGCAT 30680 >seq3187 Length=81671 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 27057 TCTTTTTGAATATTGTAGTCGCTCA-TGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTA 27115 || || ||||||||||||||| | ||| || |||| || ||||| || || ||| | Sbjct 67563 TCCTTCTGAATATTGTAGTCGGAGAGAGTTCTGC-CGTCATCAAGCTGCTTTCCAGCGAA 67505 Query 27116 AATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGT 27175 || || ||||| || || || || | ||||||||| || ||||| |||| | Sbjct 67504 GATAAGGCGCTGCTGGTCTGGAGGAATACCCTCTTTGTCCTGAATCTTCGCCTTCACATT 67445 Query 27176 TTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCAC 27235 ||| | |||||| | | || || || || || |||| || |||||||| || ||||| Sbjct 67444 TTCGATAGTGTCGGAAGGCTCCACATCAAGGGTAATAGTCTTCCCCGTCAGCGTCTTCAC 67385 Query 27236 AAAGATTTGCAT 27247 ||| || ||||| Sbjct 67384 AAAAATCTGCAT 67373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424915942443168