Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20maxima_20[genbank_20GCA_5F000499605.1_202013-11-06] 3,564 sequences; 45,975,062 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1355 118 1e-21 >seq1355 Length=110796 Score = 118 bits (130), Expect = 1e-21 Identities = 204/290 (70%), Gaps = 6/290 (2%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 || |||||||| |||| | || ||||| || || ||| | ||| | ||||||||| Sbjct 94311 GTAAAGATGTAACGGGGGGCGGATGCATCTTTTCCTCCTTCTTTCCGAGAGCCAAACTGT 94370 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || ||||| |||| ||| ||||||||| ||| || || ||| |||| | | Sbjct 94371 CCTACAGGCTCAAGGAAGTTAAGGTTGTTGCTGCCTACAAACCGCTGTGCCATGGTAATG 94430 Query 152149 ATCGTGCCCTGC--AGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATC 152206 || || |||| ||||| || || || ||||| || || |||||||||| | ||||| Sbjct 94431 ATGGTTTGCTGCAAAGACT-GC-TCTCCATGGTGGTAGGCGCTCTGCTCCGCCACGTATC 94488 Query 152207 CCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTG-AGACAGGCGTAAATC 152265 | | || ||| ||||| ||||| || | | ||| |||||| ||||| || | | | Sbjct 94489 CAGACAGCTGTGCCACTTTCATCTCGGCTTTTGTGTTTTTCTTGAAGACA-GCAAACAGC 94547 Query 152266 ACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACG 152315 |||||||||||| | |||| | |||||||| | || || ||||| || Sbjct 94548 ACCTTGCGCTGGCCTACTTTCCACCCGTCCACAAGCTGCGGGATCGAGCG 94597 Score = 86.0 bits (94), Expect = 7e-12 Identities = 174/256 (68%), Gaps = 2/256 (1%) Strand=Plus/Plus Query 117371 GGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTA 117430 ||||| | || ||| ||||||||| ||| ||||| || |||| | | | || || Sbjct 94377 GGCTCAAGGAAGTTAAGGTTGTTGCTGCCTACAAACCGCTGTGCCATGGTAATGATGGTT 94436 Query 117431 CCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGC 117490 || | | ||| |||||||| || || |||||||||||||||| || | |||| Sbjct 94437 TGCTGCAAAGACTGCTCTCCATGGTGGTAGGCGCTCTGCTCCGCCACGTATCCAGACAGC 94496 Query 117491 TGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGC 117550 || ||||| ||||| || | | ||| ||||||| | ||| | | |||||||||| Sbjct 94497 TGTGCCACTTTCATCTCGGCTTTTGTGTTTTTCTTGAAGACAGCAAACAGCACCTTGCGC 94556 Query 117551 TGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGCTTGATGTCCTCAGCGCTA 117610 || | | ||| || ||| | | || |||||||| || | |||| | | || | Sbjct 94557 TGGCCTACTTTCCACCCGTCCACAAGCTGCGGGATCGAGCGTTCATTGTCGT-ATCGTGA 94615 Query 117611 AAGTTGG-CCAAGTCC 117625 || |||| |||| ||| Sbjct 94616 AAATTGGACCAATTCC 94631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547191621527200