Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20maxima_20[genbank_20GCA_5F000499605.1_202013-11-06] 3,564 sequences; 45,975,062 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq3187 154 2e-32 seq2330 141 1e-28 seq3112 125 8e-24 seq1355 95.1 1e-14 >seq3187 Length=81671 Score = 154 bits (170), Expect = 2e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| |||||||| || || ||||||||||| ||||| || ||| | Sbjct 67373 ATGCAGATTTTTGTGAAGACGCTGACGGGGAAGACTATTACCCTTGATGTGGAGCCTTCC 67432 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| ||||||| || ||||||||||| ||||| ||||||||||||||| Sbjct 67433 GACACTATCGAAAATGTGAAGGCGAAGATTCAGGACAAAGAGGGTATTCCTCCAGACCAG 67492 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || ||||| ||||| || || || | | || || | ||||| ||| Sbjct 67493 CAGCGCCTTATCTTCGCTGGAAAGCAGCTTGATGACGGCAGAACTCTCTCCGACTACAAT 67552 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 | || |||||| ||||||||| Sbjct 67553 ATTCAGAAGGAAAGCACTCTTCA 67575 >seq2330 Length=2393 Score = 141 bits (156), Expect = 1e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || || ||||| || ||| | || |||||| || Sbjct 239 ATGCAGATCTTCGTGAAGACTCTGACTGGAAAGACCATCACTTTGGATGTTGAGCCATCA 298 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| ||||||| || |||||||| |||||||| |||||||| || ||| Sbjct 299 GATACTATCGAGAATGTGAAGGCGAAGATTCAGGATAAGGAGGGTATTCCTCCTGATCAG 358 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| ||||| || || ||||| || ||||||| | || || | || || || Sbjct 359 CAGCGTCTCATTTTCGCCGGCAAGCAGCTGGAGGATGGCAGGACGCTTTCCGATTACAAC 418 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGT 27621 | || ||||| || || |||||| | || ||||| Sbjct 419 ATTCAGAAGGAGTCTACCCTTCATTTGGTGCTGCGT 454 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || || ||||| || ||| | || || || || Sbjct 11 ATGCAGATCTTCGTGAAGACTCTGACTGGAAAGACCATCACTTTGGATGTCGAACCATCA 70 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| ||||||| || |||||||| |||||||| |||||||| || ||| Sbjct 71 GATACGATCGAGAATGTGAAGGCGAAGATTCAGGATAAGGAGGGTATTCCTCCTGATCAG 130 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| ||||| || || ||||| || ||||||| | || || | || || || Sbjct 131 CAGCGTCTCATTTTCGCCGGCAAGCAGCTGGAGGATGGCAGGACGCTTTCCGATTACAAC 190 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || || |||||| | || ||||| | | ||||| Sbjct 191 ATTCAGAAGGAGTCTACCCTTCATTTGGTGCTGCGTTTGAGAGGTGG 237 >seq3112 Length=30853 Score = 125 bits (138), Expect = 8e-24 Identities = 122/157 (78%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || || ||||| || ||| | || |||||| || Sbjct 30680 ATGCAGATCTTCGTGAAGACTCTGACTGGAAAGACCATCACTTTGGATGTTGAGCCATCA 30739 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || |||||||| |||||||| |||||||| || ||| Sbjct 30740 GACACCATCGAAAACGTAAAGGCGAAGATTCAGGATAAGGAGGGTATTCCTCCCGATCAG 30799 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATG 27562 |||||||| ||||| || || ||||| || ||||||| Sbjct 30800 CAGCGTCTCATTTTCGCCGGCAAGCAGCTGGAGGATG 30836 Score = 89.7 bits (98), Expect = 6e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||||||||| || || |||||||| || || || || |||||| || Sbjct 30451 AATGCAGATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTAGATGTTGAGCCATC 30510 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGG 27508 |||| ||| | ||| | ||||| || |||||||| ||||||| Sbjct 30511 AGATACCATCGAAAACGTAAAGGCGAAGATTCAGGATAAGGAGG 30554 >seq1355 Length=110796 Score = 95.1 bits (104), Expect = 1e-14 Identities = 173/253 (68%), Gaps = 8/253 (3%) Strand=Plus/Minus Query 32002 CAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCT----GTCGAGTGACATGAAGGT 32057 |||||||||||| | | || | ||||||| ||| | |||| ||||| || Sbjct 94558 CAGCGCAAGGTGCTGTTTGCTGTCTTCAAGAAAAACACAAAAGCCGAG----ATGAAAGT 94503 Query 32058 GGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCT 32117 ||| |||||||| || |||||||| ||||| | ||||| ||||| || ||| ||| | Sbjct 94502 GGCACAGCTGTCTGGATACGTGGCGGAGCAGAGCGCCTACCACCATGGAGAGCAGTCTTT 94443 Query 32118 CCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACT 32177 ||| ||||| | | | | || ||| ||||| || || ||||| ||||| || Sbjct 94442 GCAGCAAACCATCATTACCATGGCACAGCGGTTTGTAGGCAGCAACAACCTTAACTTCCT 94383 Query 32178 CGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCG 32237 ||||| ||||||||||| | ||| | || || || ||||| | | |||| Sbjct 94382 TGAGCCTGTAGGACAGTTTGGCTCTCGGAAAGAAGGAGGAAAAGATGCATCCGCCCCCCG 94323 Query 32238 TTACATCTTCACC 32250 ||||||||| ||| Sbjct 94322 TTACATCTTTACC 94310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570284992671680