Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20maxima_20[genbank_20GCA_5F000499605.1_202013-11-06] 3,564 sequences; 45,975,062 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq2330 156 4e-33 >seq2330 Length=2393 Score = 156 bits (172), Expect = 4e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || |||||||| || ||| | || ||| | || || ||||| || Sbjct 10 CATGCAGATCTTCGTGAAGACTCTGACTGGAAAGACCATCACTTTGGATGTCGAACCATC 69 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || |||| |||| || || || ||||| || || || || || || || ||||| Sbjct 70 AGATACGATCGAGAATGTGAAGGCGAAGATTCAGGATAAGGAGGGTATTCCTCCTGATCA 129 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||||||||| || |||| || | ||| ||||||||||||| Sbjct 130 GCAGCGTCTCATTTTCGCCGGCAAGCAGCTGGAGGATGGCAGGACGCTTTCCGATTACAA 189 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| |||||||| ||| | |||||||| |||||||| | |||||||| Sbjct 190 CATTCAGAAGGAGTCTACCCTTCATTTGGTGCTGCGTTTGAGAGGTGGCAT 240 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || |||||||| || ||| | || ||| | || || || || || Sbjct 238 CATGCAGATCTTCGTGAAGACTCTGACTGGAAAGACCATCACTTTGGATGTTGAGCCATC 297 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | || |||| || || || ||||| || || || || || || || ||||| Sbjct 298 AGATACTATCGAGAATGTGAAGGCGAAGATTCAGGATAAGGAGGGTATTCCTCCTGATCA 357 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||||||||| || |||| || | ||| ||||||||||||| Sbjct 358 GCAGCGTCTCATTTTCGCCGGCAAGCAGCTGGAGGATGGCAGGACGCTTTCCGATTACAA 417 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 |||||| |||||||| ||| | |||||||| |||||||| | || ||| Sbjct 418 CATTCAGAAGGAGTCTACCCTTCATTTGGTGCTGCGTTTGAGAGGCGGC 466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434899024385280