Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20maxima_20[genbank_20GCA_5F000499605.1_202013-11-06] 3,564 sequences; 45,975,062 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq2330 159 8e-34 seq3112 143 6e-29 seq3187 140 8e-28 >seq2330 Length=2393 Score = 159 bits (176), Expect = 8e-34 Identities = 157/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 ||||| || ||||| || || ||||| ||||| | ||| ||||| ||||| ||||||||| Sbjct 213 TGAAGGGTAGACTCCTTCTGAATGTTGTAATCGGAAAGCGTCCTGCCATCCTCCAGCTGC 154 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 ||||| ||||| || || || || || |||||||||| || ||||| ||||| ||||| Sbjct 153 TTGCCGGCGAAAATGAGACGCTGCTGATCAGGAGGAATACCCTCCTTATCCTGAATCTTC 94 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 ||||| || ||||| || || || ||| || || | |||||| |||||||| || Sbjct 93 GCCTTCACATTCTCGATCGTATCTGATGGTTCGACATCCAAAGTGATGGTCTTTCCAGTC 34 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 |||||||| || || | |||||| Sbjct 33 AGAGTCTTCACGAAGATCTGCAT 11 Score = 159 bits (176), Expect = 8e-34 Identities = 157/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 ||||| || ||||| || || ||||| ||||| | ||| ||||| ||||| ||||||||| Sbjct 441 TGAAGGGTAGACTCCTTCTGAATGTTGTAATCGGAAAGCGTCCTGCCATCCTCCAGCTGC 382 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 ||||| ||||| || || || || || |||||||||| || ||||| ||||| ||||| Sbjct 381 TTGCCGGCGAAAATGAGACGCTGCTGATCAGGAGGAATACCCTCCTTATCCTGAATCTTC 322 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 ||||| || ||||| || || || ||||| || | |||||| |||||||| || Sbjct 321 GCCTTCACATTCTCGATAGTATCTGATGGCTCAACATCCAAAGTGATGGTCTTTCCAGTC 262 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 |||||||| || || | |||||| Sbjct 261 AGAGTCTTCACGAAGATCTGCAT 239 >seq3112 Length=30853 Score = 143 bits (158), Expect = 6e-29 Identities = 136/174 (78%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 210941 ATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTC 211000 ||| | ||| ||||| ||||| |||||||||||||| ||||| || || || || || || Sbjct 30853 ATCGGAAAGCGTCCTGCCATCCTCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATC 30794 Query 211001 AGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT 211060 ||||||| || ||||| ||||| ||||| || ||||||||||||||||| || Sbjct 30793 GGGAGGAATACCCTCCTTATCCTGAATCTTCGCCTTTACGTTTTCGATGGTGTCTGATGG 30734 Query 211061 TTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || | |||||| |||||||| || |||||||| || || | |||||| Sbjct 30733 CTCAACATCCAAAGTGATGGTCTTTCCAGTCAGAGTCTTCACGAAGATCTGCAT 30680 Score = 86.0 bits (94), Expect = 1e-11 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||| ||||| ||||| || |||||||||||||| || || ||||| || || Sbjct 30552 TCCTTATCCTGAATCTTCGCCTTTACGTTTTCGATGGTATCTGATGGCTCAACATCTAGG 30493 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| ||||| |||||||| ||||| ||||| | ||||||| Sbjct 30492 GTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCATT 30451 >seq3187 Length=81671 Score = 140 bits (154), Expect = 8e-28 Identities = 155/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 |||||||||| || || || || || || || | || || || || || || ||||| Sbjct 67576 GTGAAGAGTGCTTTCCTTCTGAATATTGTAGTCGGAGAGAGTTCTGCCGTCATCAAGCTG 67517 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || |||||||||||||| || ||||| ||||||| || || |||||||| ||||| Sbjct 67516 CTTTCCAGCGAAGATAAGGCGCTGCTGGTCTGGAGGAATACCCTCTTTGTCCTGAATCTT 67457 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||||| |||||||| ||||| || || || || || || || ||||| ||||| Sbjct 67456 CGCCTTCACATTTTCGATAGTGTCGGAAGGCTCCACATCAAGGGTAATAGTCTTCCCCGT 67397 Query 211091 GAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| ||||| | |||||| || Sbjct 67396 CAGCGTCTTCACAAAAATCTGCATCTT 67370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159099068772860