Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20maxima_20[genbank_20GCA_5F000499605.1_202013-11-06] 3,564 sequences; 45,975,062 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq3187 107 2e-18 seq2330 89.7 4e-13 >seq3187 Length=81671 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || ||||| || || || ||||| || |||| || |||| |||||||| Sbjct 67581 ACCAAGTGAAGAGTGCTTTCCTTCTGAATATTGTAGTCGGAGAGAGTTCTGCCGTCATCA 67522 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| || || || || ||||| ||||||||||| | || | | |||||||||| Sbjct 67521 AGCTGCTTTCCAGCGAAGATAAGGCGCTGCTGGTCTGGAGGAATACCCTCTTTGTCCTGA 67462 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || ||| || | | | | || ||| | |||||| || | || ||| | || Sbjct 67461 ATCTTCGCCTTCACATTTTCGATAGTGTCGGAAGGCTCCACATCAAGGGTAATAGTCTTC 67402 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 ||||||||||| || ||||| || |||||||| Sbjct 67401 CCCGTCAGCGTCTTCACAAAAATCTGCATCTT 67370 >seq2330 Length=2393 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 39056 AGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGG 39115 |||| ||||| || || | ||||||||| || || ||| || || || || ||||||| Sbjct 467 AGCCGCCTCTCAAACGCAGCACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAATCGG 408 Query 39116 CAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGG 39175 ||| || | | || || ||||| ||||| || || || ||||||||||| || | | Sbjct 407 AAAGCGTCCTGCCATCCTCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCAGGAG 348 Query 39176 GCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCA 39235 | | | ||| || ||| || ||| || | || | | ||||| | ||| | Sbjct 347 GAATACCCTCCTTATCCTGAATCTTCGCCTTCACATTCTCGATAGTATCTGATGGCTCAA 288 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | |||| ||||| | ||||| ||||| || || || ||||| ||||| Sbjct 287 CATCCAAAGTGATGGTCTTTCCAGTCAGAGTCTTCACGAAGATCTGCAT 239 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||| ||||| || || | ||||||||| || || ||| || || || || ||||| Sbjct 241 CATGCCACCTCTCAAACGCAGCACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAATC 182 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 || ||| || | | || || ||||| ||||| || || || ||||||||||| || | Sbjct 181 GGAAAGCGTCCTGCCATCCTCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCAGG 122 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 || | | ||| || ||| || ||| || | || | | |||||| | || Sbjct 121 AGGAATACCCTCCTTATCCTGAATCTTCGCCTTCACATTCTCGATCGTATCTGATGGTTC 62 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||| ||||| | ||||| ||||| || || || ||||| ||||| Sbjct 61 GACATCCAAAGTGATGGTCTTTCCAGTCAGAGTCTTCACGAAGATCTGCAT 11 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429526942149932