Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20maxima_20[genbank_20GCA_5F000499605.1_202013-11-06] 3,564 sequences; 45,975,062 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq3187 140 8e-28 seq1644 113 1e-19 seq1216 113 1e-19 seq3112 111 4e-19 >seq3187 Length=81671 Score = 140 bits (154), Expect = 8e-28 Identities = 140/182 (77%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| |||||| ||| || || | |||||| |||| | |||||| || || || ||||| Sbjct 67576 GTGAAGAGTGCTTTCCTTCTGAATATTGTAGTCGGAGAGAGTTCTGCCGTCATCAAGCTG 67517 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| |||||||||||||| || || ||||| || |||||||| || ||||| || ||||| Sbjct 67516 CTTTCCAGCGAAGATAAGGCGCTGCTGGTCTGGAGGAATACCCTCTTTGTCCTGAATCTT 67457 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||||||| |||||| ||||| || | ||||| || | || || ||||| ||||| Sbjct 67456 CGCCTTCACATTTTCGATAGTGTCGGAAGGCTCCACATCAAGGGTAATAGTCTTCCCCGT 67397 Query 225690 CA 225691 || Sbjct 67396 CA 67395 >seq1644 Length=4506 Score = 113 bits (124), Expect = 1e-19 Identities = 102/127 (80%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| ||||| | ||| ||| ||||||||||||| ||||||||||| | | | | Sbjct 177 TGGTAAGGTTCTTCGTGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGAGCCC 236 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATA-TTTACGC 7854 |||||| || |||||||||| | |||||| |||| |||||||| || ||| || |||| Sbjct 237 CCGTCAATTCCTTTGAGTTTCACTCTTGCGAGCGTACTACTCAGGCGGGATACTTAACGC 296 Query 7855 GTTAGCT 7861 ||||||| Sbjct 297 GTTAGCT 303 >seq1216 Length=6849 Score = 113 bits (124), Expect = 1e-19 Identities = 109/139 (78%), Gaps = 1/139 (1%) Strand=Plus/Plus Query 7724 TATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGC 7783 |||||| | | ||||||| ||||| |||||| ||| ||||||||||||| |||||| || Sbjct 2523 TATTTCAAACGCTGGTAAGGTTCTTCGCGTTACATCGAATTAAACCACATGCTCCACTGC 2582 Query 7784 TTATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGG 7843 || | | | | ||| || || |||||||||| | |||||| |||| |||||||| || Sbjct 2583 TTGTGCGAGCCCCCGCCAATTCCTTTGAGTTTCACTCTTGCGAGCGTACTACTCAGGCGG 2642 Query 7844 AATA-TTTACGCGTTAGCT 7861 || || ||||||||||| Sbjct 2643 GTTACTTAACGCGTTAGCT 2661 >seq3112 Length=30853 Score = 111 bits (122), Expect = 4e-19 Identities = 123/164 (75%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 225550 GTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATA 225609 || || ||||| || |||||||| || ||||| || || || || || ||||| |||||| Sbjct 30843 GTCCTGCCATCCTCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCGGGAGGAATA 30784 Query 225610 CCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCT 225669 || ||||| || || ||||| ||| || ||||||||||||||| | || || || Sbjct 30783 CCCTCCTTATCCTGAATCTTCGCCTTTACGTTTTCGATGGTGTCTGATGGCTCAACATCC 30724 Query 225670 AACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| ||||| || |||| ||| || | ||| | ||||| Sbjct 30723 AAAGTGATGGTCTTTCCAGTCAGAGTCTTCACGAAGATCTGCAT 30680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192476744553416