Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20maxima_20[genbank_20GCA_5F000499605.1_202013-11-06] 3,564 sequences; 45,975,062 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1946 105 9e-18 seq3296 95.1 2e-14 >seq1946 Length=2437 Score = 105 bits (116), Expect = 9e-18 Identities = 135/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 77990 ACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATC 78049 ||||| ||| | |||| || |||||| ||||||||||||||||||||| ||||||||| Sbjct 1445 ACCATTTTCATATACTCTTTGCATAAATAGATCAGGTATCCATAGAGCAGGAAATAGATC 1504 Query 78050 TCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATC 78109 || | || ||||| || || ||| ||| | | ||| | || || | ||||| Sbjct 1505 TCTTGCCCTCATCTCTTCTTTGCCATGATTTTTTCTTATATCTAAGAATTCAAATATATC 1564 Query 78110 AGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATC 78169 | |||||||||||||||||||| || | | ||| || ||| ||||| ||||| Sbjct 1565 TGCATGCCATGGTTCTAGATATACAGCAAGACTTCCTTTTCTTTTCCCTCCTCCTTGATC 1624 Query 78170 TATATA 78175 || ||| Sbjct 1625 TACATA 1630 Score = 91.5 bits (100), Expect = 2e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 77471 ATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAAT 77530 |||||| ||| | | | ||||| ||| ||| |||||||| || || || ||||| || Sbjct 1126 ATCAAAAGGAAGACGAAGAAGAAGAAAACAATCAGCTAATCCTTGTACACCTATACCTAT 1185 Query 77531 AGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTAT 77590 |||||||||| | ||||| | || || ||| | |||||||||||||| | || || Sbjct 1186 AGGTCTATGTTTTTTATTACTATATTCTGCCTCTTGTATAGGATAATAATTTTTATCAAT 1245 Query 77591 AATTTTATTGAGATT 77605 ||| ||||| ||||| Sbjct 1246 AATATTATTAAGATT 1260 >seq3296 Length=20226 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 48549 CTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTA 48608 ||||||||||| ||||| | ||||| ||||||||| |||||| || | | ||| Sbjct 1409 CTAGCAGCAAAGAATGCAAGAACATGCATAATAAAATGTTTTTCTTTATCATCTAATTTT 1468 Query 48609 TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCT 48668 ||| ||||| | ||| ||||| | |||||| || ||||||||||||||||| Sbjct 1469 CCCCAATCATTTAGATCGGCCTGCATATCAATTTCTTCGGCGGTCCAAAATGATGCCTCC 1528 Query 48669 GCTTTTTTATACATATTCCATA 48690 ||||| |||||||| | ||||| Sbjct 1529 GCTTTCTTATACATCTCCCATA 1550 Score = 84.2 bits (92), Expect = 3e-11 Identities = 89/115 (77%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 48438 TCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATC 48497 ||||||||||||||||| | || || |||||| | || |||| |||||| || | ||| Sbjct 1024 TCGGAGTGAATATTTTCGACGGCAATTTGAAATGCATAGAAACTTCTCGCCTCGGGGATT 1083 Query 48498 TGTACCTCCGTACA-AAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTA 48551 || || || | ||| ||||| || || |||||||| ||||||| || |||||| Sbjct 1084 TGAACTTCTG-ACATAAATCTCTCCGCTAAATTCTCCATTACTATACCGTCACTA 1137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694637852504960