Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20maxima_20[genbank_20GCA_5F000499605.1_202013-11-06] 3,564 sequences; 45,975,062 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1946 105 1e-17 >seq1946 Length=2437 Score = 105 bits (116), Expect = 1e-17 Identities = 135/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 76585 ACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATC 76644 ||||| ||| | || | || |||||| ||||||||||||||||||||| ||||||||| Sbjct 1445 ACCATTTTCATATACTCTTTGCATAAATAGATCAGGTATCCATAGAGCAGGAAATAGATC 1504 Query 76645 TCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATC 76704 || | || ||||| || || ||| ||| | | ||||| ||| || | ||||| Sbjct 1505 TCTTGCCCTCATCTCTTCTTTGCCATGATTTTTTCTTATATCTAAGAATTCAAATATATC 1564 Query 76705 AGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATC 76764 | |||||||||||||||||||| || | | || || ||| ||||| ||||| Sbjct 1565 TGCATGCCATGGTTCTAGATATACAGCAAGACTTCCTTTTCTTTTCCCTCCTCCTTGATC 1624 Query 76765 TATATA 76770 || ||| Sbjct 1625 TACATA 1630 Score = 102 bits (112), Expect = 1e-16 Identities = 155/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 75984 CAGCTAGTTCGCA-ACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTA 76042 |||| |||| ||| ||| ||||| | ||| | || || || ||||| || || || Sbjct 1044 CAGCAAGTT-GCATACTAGCCTCGCATGCAGCATAGTATATACACTCGAAGATATTTTTG 1102 Query 76043 TTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCT 76102 || | | || ||||| | |||||||||| | | | ||||| ||| ||| ||| Sbjct 1103 TTTAATTGTTTAGCTTCTTGTGAATCAAAAGGAAGACGAAGAAGAAGAAAACAATCAGCT 1162 Query 76103 AGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGA 76162 | ||| || || || ||||| |||||||||||| | ||||| | ||| || ||| | Sbjct 1163 AATCCTTGTACACCTATACCTATAGGTCTATGTTTTTTATTACTATATTCTGCCTCTTGT 1222 Query 76163 ATAGGGTAATAATTAATATCTATAATTTTATTGAGATT 76200 ||||| |||||||| |||| ||||| ||||| ||||| Sbjct 1223 ATAGGATAATAATTTTTATCAATAATATTATTAAGATT 1260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712902638772480