Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20maxima_20[genbank_20GCA_5F000499605.1_202013-11-06] 3,564 sequences; 45,975,062 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq2330 143 6e-29 seq3187 129 1e-24 seq3112 127 4e-24 >seq2330 Length=2393 Score = 143 bits (158), Expect = 6e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | || || || |||| ||| | || || || || |||||||| || | | Sbjct 237 CCACCTCTCAAACGCAGCACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAATCGGAA 178 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||| | ||||||||| || || || ||||| || || | ||| || || ||| ||| Sbjct 177 AGCGTCCTGCCATCCTCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCAGGAGGA 118 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||||||||| || || ||||| || || || | ||||| || || || | |||||| Sbjct 117 ATACCCTCCTTATCCTGAATCTTCGCCTTCACATTCTCGATCGTATCTGATGGTTCGACA 58 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | |||||| ||||| || |||| |||||| ||||| |||||||| Sbjct 57 TCCAAAGTGATGGTCTTTCCAGTCAGAGTCTTCACGAAGATCTGCAT 11 Score = 138 bits (152), Expect = 2e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || || |||||||| || | |||||| | ||||||||| || || || ||||| || Sbjct 429 TCCTTCTGAATGTTGTAATCGGAAAGCGTCCTGCCATCCTCCAGCTGCTTGCCGGCGAAA 370 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | ||| || || ||| |||||||||||||| || || ||||| || || || | Sbjct 369 ATGAGACGCTGCTGATCAGGAGGAATACCCTCCTTATCCTGAATCTTCGCCTTCACATTC 310 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 |||||||| || || | || || || | |||||| ||||| || |||| |||||| ||| Sbjct 309 TCGATAGTATCTGATGGCTCAACATCCAAAGTGATGGTCTTTCCAGTCAGAGTCTTCACG 250 Query 283089 AATATCTGCAT 283099 || |||||||| Sbjct 249 AAGATCTGCAT 239 >seq3187 Length=81671 Score = 129 bits (142), Expect = 1e-24 Identities = 157/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 282890 TACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTC 282949 ||||| || | |||||||| || || || |||||||| | || || | ||| || || Sbjct 67582 TACCAAGTGAAGAGTGCTTTCCTTCTGAATATTGTAGTCGGAGAGAGTTCTGCCGTCATC 67523 Query 282950 TAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTG 283009 || || || || || ||||| | || || ||||| ||||||||||| ||||| || Sbjct 67522 AAGCTGCTTTCCAGCGAAGATAAGGCGCTGCTGGTCTGGAGGAATACCCTCTTTGTCCTG 67463 Query 283010 GATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTT 283069 ||||| || || || | ||||||||||| |||| || || || || || || ||||| Sbjct 67462 AATCTTCGCCTTCACATTTTCGATAGTGTCGGAAGGCTCCACATCAAGGGTAATAGTCTT 67403 Query 283070 ACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 ||||||| ||||| || || |||||||| ||| Sbjct 67402 CCCCGTCAGCGTCTTCACAAAAATCTGCATCTTC 67369 >seq3112 Length=30853 Score = 127 bits (140), Expect = 4e-24 Identities = 129/168 (77%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 |||||| | ||||||||| || || || ||||| || || | ||| || || || || Sbjct 30847 AAGCGTCCTGCCATCCTCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCGGGAGG 30788 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||| || || ||||| || |||||| | ||||| ||||| || | || || Sbjct 30787 AATACCCTCCTTATCCTGAATCTTCGCCTTTACGTTTTCGATGGTGTCTGATGGCTCAAC 30728 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | |||||| ||||| || |||| |||||| ||||| |||||||| Sbjct 30727 ATCCAAAGTGATGGTCTTTCCAGTCAGAGTCTTCACGAAGATCTGCAT 30680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046691401962856