Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20maxima_20[genbank_20GCA_5F000499605.1_202013-11-06] 3,564 sequences; 45,975,062 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2330 138 3e-27 seq3187 129 1e-24 seq3112 129 1e-24 >seq2330 Length=2393 Score = 138 bits (152), Expect = 3e-27 Identities = 151/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| ||||| || ||||| || ||||| | || || ||| ||||| Sbjct 14 CAGATCTTCGTGAAGACTCTGACTGGAAAGACCATCACTTTGGATGTCGAACCATCAGAT 73 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || || ||||||||||| || || || || ||||| || ||||| Sbjct 74 ACGATCGAGAATGTGAAGGCGAAGATTCAGGATAAGGAGGGTATTCCTCCTGATCAGCAG 133 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || |||||||| || ||||| || ||||| ||||| ||| ||||||| ||| | Sbjct 134 CGTCTCATTTTCGCCGGCAAGCAGCTGGAGGATGGCAGGACGCTTTCCGATTACAACATT 193 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || || || || || || ||| Sbjct 194 CAGAAGGAGTCTACCCTTCAT 214 Score = 132 bits (146), Expect = 1e-25 Identities = 150/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| ||||| || ||||| || ||||| | || || || ||||| Sbjct 242 CAGATCTTCGTGAAGACTCTGACTGGAAAGACCATCACTTTGGATGTTGAGCCATCAGAT 301 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || || ||||||||||| || || || || ||||| || ||||| Sbjct 302 ACTATCGAGAATGTGAAGGCGAAGATTCAGGATAAGGAGGGTATTCCTCCTGATCAGCAG 361 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || |||||||| || ||||| || ||||| ||||| ||| ||||||| ||| | Sbjct 362 CGTCTCATTTTCGCCGGCAAGCAGCTGGAGGATGGCAGGACGCTTTCCGATTACAACATT 421 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || || || || || || ||| Sbjct 422 CAGAAGGAGTCTACCCTTCAT 442 >seq3187 Length=81671 Score = 129 bits (142), Expect = 1e-24 Identities = 142/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| ||||| || || || || || || || ||||| || ||||| || ||| Sbjct 67376 CAGATTTTTGTGAAGACGCTGACGGGGAAGACTATTACCCTTGATGTGGAGCCTTCCGAC 67435 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || ||||||||||||||||| || || ||||| |||||||| Sbjct 67436 ACTATCGAAAATGTGAAGGCGAAGATTCAGGACAAAGAGGGTATTCCTCCAGACCAGCAG 67495 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||||||||| ||||| ||||| || || || || ||||| |||| || || | Sbjct 67496 CGCCTTATCTTCGCTGGAAAGCAGCTTGATGACGGCAGAACTCTCTCCGACTACAATATT 67555 Query 178104 CAAAAAGAA 178112 || || ||| Sbjct 67556 CAGAAGGAA 67564 >seq3112 Length=30853 Score = 129 bits (142), Expect = 1e-24 Identities = 131/171 (77%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| ||||| || ||||| || ||||| | || || || |||||| Sbjct 30683 CAGATCTTCGTGAAGACTCTGACTGGAAAGACCATCACTTTGGATGTTGAGCCATCAGAC 30742 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| || ||||||||||| || || || || ||||| || ||||| Sbjct 30743 ACCATCGAAAACGTAAAGGCGAAGATTCAGGATAAGGAGGGTATTCCTCCCGATCAGCAG 30802 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || || || |||||||| || ||||| || ||||| ||||| ||| ||||| Sbjct 30803 CGTCTCATTTTCGCCGGCAAGCAGCTGGAGGATGGCAGGACGCTTTCCGAT 30853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203676233119416