Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20maxima_20[genbank_20GCA_5F000499605.1_202013-11-06] 3,564 sequences; 45,975,062 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq3187 129 5e-25 seq2330 111 1e-19 >seq3187 Length=81671 Score = 129 bits (142), Expect = 5e-25 Identities = 158/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| || || ||||| ||||||||||| || ||||||||||| || | |||| || Sbjct 67581 ACCAAGTGAAGAGTGCTTTCCTTCTGAATATTGTAGTCGGAGAGAGTTCTGCCGTCATCA 67522 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||| || ||||| || |||||||| ||||| | |||| | ||| |||||| || Sbjct 67521 AGCTGCTTTCCAGCGAAGATAAGGCGCTGCTGGTCTGGAGGAATACCCTCTTTGTCC-TG 67463 Query 41774 ATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 | | || | ||||| | ||||||| | |||||| || | || || || || Sbjct 67462 AATCTTCGCCTTCACATTTTCGATAGTGTCGGAAGGCTCCACATCAAGGGTAATAGTCTT 67403 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||||||||||||| || ||||||||||| || Sbjct 67402 CCCCGTCAGCGTCTTCACAAAAATCTGCATCTT 67370 >seq2330 Length=2393 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| | | ||| | ||||| ||| || || ||||||||||||||| || ||||| Sbjct 466 GCCGCCTCTCAAACGCAGCACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAATCGGA 407 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || | | || || ||||||||||||||||| || || ||||| || || | || Sbjct 406 AAGCGTCCTGCCATCCTCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCAGGAGG 347 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCA 41813 || | |||||| ||| ||| | || | ||||| | | ||| || | ||| | Sbjct 346 AATACCCTCCTTATCC-TGAATCTTCGCCTTCACATTCTCGATAGTATCTGATGGCTCAA 288 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | |||| || || || || || ||||| ||||| ||||| ||||||||| Sbjct 287 CATCCAAAGTGATGGTCTTTCCAGTCAGAGTCTTCACGAAGATCTGCATG 238 Score = 98.7 bits (108), Expect = 9e-16 Identities = 154/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 41647 ACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTC 41706 ||| | ||||| ||| || || ||||||||||||||| || ||||| || || | | Sbjct 226 ACGCAGCACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAATCGGAAAGCGTCCTGCC 167 Query 41707 GTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTT 41766 || || ||||||||||||||||| || || ||||| || || | |||| | |||||| Sbjct 166 ATCCTCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCAGGAGGAATACCCTCCTT 107 Query 41767 GTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTA 41825 ||| ||| | || | ||||| | | || || | || || |||| || | Sbjct 106 ATCC-TGAATCTTCGCCTTCACATTCTCGATCGTATCTGATGGTTCGACATCCAAAGTGA 48 Query 41826 TCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || || || ||||| ||||| ||||| ||||||||| Sbjct 47 TGGTCTTTCCAGTCAGAGTCTTCACGAAGATCTGCATG 10 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462283404356800