Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20mitis_20[genbank_20GCA_5F000499745.1_202013-11-06] 10,336 sequences; 60,415,144 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq3103 114 2e-20 >seq3103 Length=10288 Score = 114 bits (126), Expect = 2e-20 Identities = 299/455 (66%), Gaps = 22/455 (5%) Strand=Plus/Plus Query 53439 ATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTAT 53498 ||||| | |||||||| || ||||| ||||||| | || ||||| | || Sbjct 373 ATGCAGCATAATAAATACACTCAAAGATAGATTTATTTAATTGTTTAGCTTCTATAGAAT 432 Query 53499 CAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAG 53558 ||||||| || ||||| | || ||| |||| |||| || || ||||| ||||| || | Sbjct 433 CAAATGGGTATTTTAATATAAGAAAGACGTCAGCTAGGCCCTGTACACCTATACCTATGG 492 Query 53559 GTCTATGTCTCTTATTAGAGATTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATA 53617 |||| ||| | || || | | || || || || | |||||| | || ||||||| Sbjct 493 GTCTGTGTTTTTTGTT-GCTCTCTCTCGCCTCGGGGAGAGGATAGAAGTTGTTATCTATT 551 Query 53618 ATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGA-AAATCAAA 53676 |||||||| || ||| || ||||| || || | || || | | |||| |||||||| Sbjct 552 ATTTTATTTAGATTTATGGTGATTACCTTTACTATATATTTTAATA-GAGAGAAATCAAA 610 Query 53677 ------------------TTGTCCATCTATTACAAACATGTTCAATGCAATAGATGCCAG 53718 || | | | | ||| | | | || | |||||||| || Sbjct 611 GAAATATTTATTTGTTTTTTTTTCTTTTTTTATACATTTAGGTAAAGATATAGATGCTAG 670 Query 53719 ATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACT 53778 ||||| || ||||| || | || | |||||||||||| ||| || | |||||| Sbjct 671 GTTACATACAGCTACTTCTTCTTTATTTGTATATTGTATTATTTCACAACATAAATTACT 730 Query 53779 ACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAG 53838 | || ||||||| |||||||||||||||| | || || ||||| ||||| | Sbjct 731 CGATCGTATACACCCTAAATGTTGTTGATTACTCTTTCTATTGCATGCATCTTTATATAA 790 Query 53839 AATGAATGGCGTACCAGTTTCAATCTGGGATTCTA 53873 || |||| || || || || ||||| | || || Sbjct 791 CATATATGGTGTTCCTGTCTCTATCTGTGCTTGTA 825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593644891169280