Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20mitis_20[genbank_20GCA_5F000499745.1_202013-11-06] 10,336 sequences; 60,415,144 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3225 120 3e-22 >seq3225 Length=28280 Score = 120 bits (132), Expect = 3e-22 Identities = 170/234 (73%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 || |||||| || || || || |||||||||||||| |||||||| | || || || || Sbjct 611 AACAATGCAGATCTTTGTCAAGACGCTCACGGGCAAGACCATCACTCTGGATGTTGA-GC 553 Query 40746 CACC-GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCG 40803 || | || | | | |||| | || | ||| |||| ||||| ||||| ||||| | Sbjct 552 CATCAGATACTATAGAGAACG-TGAAAGCAAAGATTCAGGACAAGGAGGGTATCCCTCCT 494 Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863 |||||||| || ||||| | ||| ||||| |||||||| || | | || || |||| Sbjct 493 GACCAGCAGCGTCTCATTTTCGCCGGCAAGCAGCTGGAAGATGGCAGGACACTGTCCGAC 434 Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||| ||||| || | || || ||||| || | ||| |||| || ||| Sbjct 433 TACAACATTCAGAAAGAATCTACCCTTCATCTGGTACTCCGCCTGAGAGGTGGC 380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515152633679360