Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20mitis_20[genbank_20GCA_5F000499745.1_202013-11-06] 10,336 sequences; 60,415,144 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq3225 127 2e-24 >seq3225 Length=28280 Score = 127 bits (140), Expect = 2e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 ||||| ||||| ||||| ||||| ||| || || | ||| || |||||||||||| Sbjct 183 GTAGATTCTTTCTGAATATTGTAGTCGGACAGCGTTCTACCATCTTCTAGCTGTTTTCCA 242 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | ||||||||||||||||| ||||| || || |||||||| ||| ||| ||| Sbjct 243 GCGAAAATGAGACGCTGCTGATCAGGAGGAATACCTTCCTTGTCCTGAATCTTTGCTTTC 302 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | ||||| ||| || | ||| || || | || | || ||||| |||||||| Sbjct 303 ACGTTTTCGATGGTATCTGATGGCTCAACATCCAGAGTGATGGTCTTGCCAGTCAGAGTC 362 Query 118722 TTTACAAAAATCTGCATG 118739 || ||||| || |||||| Sbjct 363 TTCACAAAGATTTGCATG 380 Score = 104 bits (114), Expect = 2e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 118588 CGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTG 118647 ||||||| ||||| ||| | ||||||||||||||||| ||||| || || |||||||| Sbjct 1 CGAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCAGGAGGAATACCTTCCTTGTCCT 60 Query 118648 TAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTT 118707 ||| ||| ||| || | ||| | ||| || | ||| || || | ||| | ||| | Sbjct 61 GAATCTTTGCTTTCACGTTTTCAATGGTATCTGATGGCTCAACATCCAAGGTGATCGTCT 120 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||| |||||||| || || || || |||||| Sbjct 121 TGCCAGTCAGAGTCTTCACGAAGATTTGCATG 152 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 ||||| ||||| ||||||||||| ||| || || | ||| || ||||| || || Sbjct 411 GTAGATTCTTTCTGAATGTTGTAGTCGGACAGTGTCCTGCCATCTTCCAGCTGCTTGCCG 470 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | |||||||||||||| || ||||| || ||||||||||| ||| ||| ||| Sbjct 471 GCGAAAATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGAATCTTTGCTTTC 530 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | || || | ||| || || | || | || ||||| || || || Sbjct 531 ACGTTCTCTATAGTATCTGATGGCTCAACATCCAGAGTGATGGTCTTGCCCGTGAGCGTC 590 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| |||||||| Sbjct 591 TTGACAAAGATCTGCAT 607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433775750384512