Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20mitis_20[genbank_20GCA_5F000499745.1_202013-11-06] 10,336 sequences; 60,415,144 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq3225 114 1e-20 seq1836 82.4 9e-11 >seq3225 Length=28280 Score = 114 bits (126), Expect = 1e-20 Identities = 148/202 (73%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 || || ||||| ||||| || | ||| |||| | || || |||||||| || ||||| Sbjct 417 TCTTTCTGAATGTTGTAGTCGGACAGTGTCCTGCCATCTTCCAGCTGCTTGCCGGCGAAA 476 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111 ||||| ||||||||||| | || | | |||||||||| ||| | |||| ||| | | Sbjct 477 ATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCC-TGAATCTTTGCTTTCACGTT 535 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | || || | || ||||| | |||||||| |||||||| |||||||| || Sbjct 536 CTCTATAGTATCTGATGGCTCAACATCCAGAGTGATGGTCTTGCCCGTGAGCGTCTTGAC 595 Query 43172 AAAGATTTGCATTTTTACGCCG 43193 |||||| |||||| || | ||| Sbjct 596 AAAGATCTGCATTGTTGCACCG 617 Score = 96.9 bits (106), Expect = 4e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 || || ||||||||||| || | ||| || | | || |||||||| || |||||||| Sbjct 189 TCTTTCTGAATATTGTAGTCGGACAGCGTTCTACCATCTTCTAGCTGTTTTCCAGCGAAA 248 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111 ||||| |||||||| || | || | | ||||||||| ||| | |||| ||| | | Sbjct 249 ATGAGACGCTGCTGATCAGGAGGAATACCTTCCTTGTCC-TGAATCTTTGCTTTCACGTT 307 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | || || | || ||||| | |||||||| ||||| || || ||||| || Sbjct 308 TTCGATGGTATCTGATGGCTCAACATCCAGAGTGATGGTCTTGCCAGTCAGAGTCTTCAC 367 Query 43172 AAAGATTTGCAT 43183 |||||||||||| Sbjct 368 AAAGATTTGCAT 379 >seq1836 Length=11757 Score = 82.4 bits (90), Expect = 9e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | |||||||||||||| | || || || ||||||||||| |||| | Sbjct 11648 CCACCTCTCAGGCGCAACACCAAATGAAGGGTAGATTCTTTCTGAATATTGTAGTCAGAC 11707 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTG 43066 || || | |||| || |||||||| || ||||| ||||| |||||||| Sbjct 11708 AGCGTTCTGCCGTCCTCGAGCTGCTTTCCGGCGAAAATGAGACGCTGCTG 11757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571743721166080