Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20mitis_20[genbank_20GCA_5F000499745.1_202013-11-06] 10,336 sequences; 60,415,144 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq3225 134 9e-27 >seq3225 Length=28280 Score = 134 bits (148), Expect = 9e-27 Identities = 159/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || ||||| || | ||| ||||||||| ||||||||||||||||| | | | || Sbjct 396 AGTACCAGATGAAGGGTAGATTCTTTCTGAATGTTGTAGTCGGACAGTGTCCTGCCATCT 455 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||||||||| ||||||||||| ||||||||||| || | | ||||||||| Sbjct 456 TCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCC 515 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||| |||||||| | | |||| | ||| | | || || |||| |||||||| Sbjct 516 TGAATC-TTTGCTTTCACGTTCTCTATAGTATCTGATGGCTCAACATCCAGAGTGATGGT 574 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| ||||| || || |||||||||||||| Sbjct 575 CTTGCCCGTGAGCGTCTTGACAAAGATCTGCAT 607 Score = 98.7 bits (108), Expect = 6e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||||||||| || ||||||||||||||| | | || || | ||| || || ||||| Sbjct 188 TTCTTTCTGAATATTGTAGTCGGACAGCGTTCTACCATCTTCTAGCTGTTTTCCAGCGAA 247 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGAT 34316 |||||| |||||||| || || | | |||||||| ||| |||||||| | | Sbjct 248 AATGAGACGCTGCTGATCAGGAGGAATACCTTCCTTGTCCTGAATC-TTTGCTTTCACGT 306 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | || | ||| | | || || |||| |||||||| ||||| || ||||| |||| Sbjct 307 TTTCGATGGTATCTGATGGCTCAACATCCAGAGTGATGGTCTTGCCAGTCAGAGTCTTCA 366 Query 34377 CAAAGATCTGCAT 34389 ||||||| ||||| Sbjct 367 CAAAGATTTGCAT 379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323031302620160