Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20mitis_20[genbank_20GCA_5F000499745.1_202013-11-06] 10,336 sequences; 60,415,144 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq4538 89.7 5e-13 >seq4538 Length=22927 Score = 89.7 bits (98), Expect = 5e-13 Identities = 120/163 (74%), Gaps = 8/163 (5%) Strand=Plus/Plus Query 15943 TTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATT 16002 ||| || || |||| ||| | ||||||||||||||||||||||||| ||| ||||| Sbjct 8274 TTTCTGGTAATCACCAACACGTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGAAATTAA 8333 Query 16003 TTCCATAAAATCAAAAGGATTTTTTGAA--CAATAGTATTTATCGCATCCCAATTCCAA- 16059 |||||||| ||||||||||| ||| |||| | ||| || | ||||| ||| Sbjct 8334 ATCCATAAAGTCAAAAGGATTACGCGAATTGAATATTTTTTCTCCC--CCCAA--ACAAG 8389 Query 16060 -CAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAA 16101 || || | ||| || ||||| || |||||||| |||||| Sbjct 8390 TCAGCAAACGATCAGCAACAAACTCAATATACTGCGACATTAA 8432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462452243449600