Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20mitis_20[genbank_20GCA_5F000499745.1_202013-11-06] 10,336 sequences; 60,415,144 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq3225 140 3e-28 >seq3225 Length=28280 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| || || ||||||||||| ||||| || ||||| | || ||||| || || Sbjct 380 CATGCAAATCTTTGTGAAGACTCTGACTGGCAAGACCATCACTCTGGATGTTGAGCCATC 321 Query 31252 CGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 || | |||||| || ||| || ||| | |||||||||||| | || || || | Sbjct 320 AGATACCATCGAAAACGTGAAAGCAAAGATTCA-GGACAAGGAAGGTATTCCTCCTGATC 262 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 |||||||||| || |||||||| |||||| | ||||| || || || ||| || | Sbjct 261 AGCAGCGTCTCATTTTCGCTGGAAAACAGCTAGAAGATGGTAGAACGCTGTCCGACTACA 202 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 | ||||| |||||||| || |||||| | || ||| | ||||| || || Sbjct 201 ATATTCAGAAAGAATCTACCCTTCATTTAGTTCTTCGCCTGAGAGGTGG 153 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || || ||||| || ||||| | || ||||| || || Sbjct 607 ATGCAGATCTTTGTCAAGACGCTCACGGGCAAGACCATCACTCTGGATGTTGAGCCATCA 548 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | | || | || ||| || ||| | ||||||||| || | || || ||||| Sbjct 547 GATACTATAGAGAACGTGAAAGCAAAGATTCA-GGACAAGGAGGGTATCCCTCCTGACCA 489 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || ||||| ||||| ||| ||||||| | ||| || ||| || || Sbjct 488 GCAGCGTCTCATTTTCGCCGGCAAGCAGCTGGAAGATGGCAGGACACTGTCCGACTACAA 429 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||| |||||||| || |||||||||||||| | ||||| || || Sbjct 428 CATTCAGAAAGAATCTACCCTTCATCTGGTACTCCGCCTGAGAGGTGG 381 Score = 104 bits (114), Expect = 2e-17 Identities = 114/149 (77%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| ||||||||||| ||||| ||||||||| | || ||||| || || Sbjct 152 CATGCAAATCTTCGTGAAGACTCTGACTGGCAAGACGATCACCTTGGATGTTGAGCCATC 93 Query 31252 CGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 || | | |||| || ||| || ||| | |||||||||||| | || || || | Sbjct 92 AGATACCATTGAAAACGTGAAAGCAAAGATTCA-GGACAAGGAAGGTATTCCTCCTGATC 34 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAG 31339 |||||||||| || ||||| || || ||| Sbjct 33 AGCAGCGTCTCATTTTCGCCGGAAAGCAG 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445708806981120