Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20mitis_20[genbank_20GCA_5F000499745.1_202013-11-06] 10,336 sequences; 60,415,144 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq3103 111 1e-19 >seq3103 Length=10288 Score = 111 bits (122), Expect = 1e-19 Identities = 381/586 (65%), Gaps = 26/586 (4%) Strand=Plus/Plus Query 37428 TGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATC 37487 ||| |||||||| || || || || | |||||||| ||| |||||| ||| Sbjct 374 TGCAGCATAATAAATACACTCAAAGATAGATTTATTTAATTGTTTAGCTTCTATAGAATC 433 Query 37488 GAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGG 37547 |||| || |||| | ||| || ||||| | ||||| ||||| ||||||||||| Sbjct 434 AAATGGGTATTTTAATATAAGAAAGACGTCAGCTAGGCCCTGTACACCTATACCTATGGG 493 Query 37548 TCTATGTTTCTTATTAGATCTAGA-CGATTCTATCACTGGATAATAATTGATATCTATTA 37606 ||| ||||| || || | ||| || || | ||||| | ||| ||||||||| Sbjct 494 TCTGTGTTTTTTGTT-GCTCTCTCTCGCCTCGGGGAGAGGATAGAAGTTGTTATCTATTA 552 Query 37607 TTTTATTTAGATTTTTAACTAGTAT-TTTCGTAATTATTCTCAACTTGTCGAAC---ATA 37662 |||||||||||||| | | || ||| || |||| | | | || | | Sbjct 553 TTTTATTTAGATTTATGGTGATTACCTTTACTATATATTTTAATAGAGAGAAATCAAAGA 612 Query 37663 AATAC------GTTATTATTA--------ACAAATTTACTCAACGAAATAGATCCTAGAT 37708 |||| ||| || || | | ||||| || || |||||| |||| | Sbjct 613 AATATTTATTTGTTTTTTTTTCTTTTTTTATACATTTAGGTAAAGATATAGATGCTAGGT 672 Query 37709 TACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTCG 37768 |||||||||| ||||| |||| || || ||||||| || || ||| | |||||||| Sbjct 673 TACATACAGCTACTTCTTCTTTATTTGTATATTGTATTATTTCACAACATAAATTACTCG 732 Query 37769 ATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTA 37828 ||| || || |||| |||||| ||| |||| || | ||||||||||| | Sbjct 733 ATCGTATACACCCTAAATGTTGTTGATTACTCTTTCTATTGCATGCATCTTTATATAACA 792 Query 37829 TATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATT--TCCATAAACTTCTTGC 37886 |||| || |||||| ||||| || || | ||||| | | ||||| || ||| Sbjct 793 TATATGGTGTTCCTGTCTCTATCTGTGCTT--GTAATATACTAAACCATAGTTTTTGTGC 850 Query 37887 TTTAACGATCGCTTTAAtttttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATC 37946 ||| | | | | | || | ||||||| | ||||||| || ||||| || Sbjct 851 TTTTATCTTTCTTCTCCCTCGACCCTCTCGCTCGTATTTTTTATATAAATTATTAAACTC 910 Query 37947 ATTCCCCCATACA-TCGCATAATCCTGGACATTCGCATGGACACAT 37991 ||| ||| ||| || ||| || || || |||| ||||||||| Sbjct 911 -TTCACCCCAACATTCAGTTAAACCAGGGCACTCGCTTGGACACAT 955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468464266595840