Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20mitis_20[genbank_20GCA_5F000499745.1_202013-11-06] 10,336 sequences; 60,415,144 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq3225 129 4e-25 >seq3225 Length=28280 Score = 129 bits (142), Expect = 4e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||||||||||| | | ||||||||||||||| || ||||| || || ||||| ||| Sbjct 151 TGCCACCTCTCAGGCGAAGAACTAAATGAAGGGTAGATTCTTTCTGAATATTGTAGTCGG 210 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || |||| | ||||||| ||||| |||||| | || | ||| || || || | Sbjct 211 ACAGCGTTCTACCATCTTCTAGCTGTTTTCCAGCGAAAATGAGACGCTGCTGATCAGGAG 270 Query 15255 GAATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313 |||| ||||| ||||| ||| |||||| || || |||| |||||||| || Sbjct 271 GAATACCTTCCTTGTCCTGAATCTTTGCT-TTCACGTTTTCGATGGTATCTGATGGCTCA 329 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| | || ||||| || || |||||||| || ||||| |||||||| Sbjct 330 ACATCCAGAGTGATGGTCTTGCCAGTCAGAGTCTTCACAAAGATTTGCAT 379 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||||||||||| | | || | ||||||||| || ||||| || |||||||| ||| Sbjct 379 TGCCACCTCTCAGGCGGAGTACCAGATGAAGGGTAGATTCTTTCTGAATGTTGTAGTCGG 438 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || | || | ||||| | || ||||| ||| | || | ||| || ||||| | Sbjct 439 ACAGTGTCCTGCCATCTTCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCAGGAG 498 Query 15255 GAATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313 | || || || ||||| ||| |||||| || || | ||||| ||||| || Sbjct 499 GGATACCCTCCTTGTCCTGAATCTTTGCT-TTCACGTTCTCTATAGTATCTGATGGCTCA 557 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| | || ||||| || || || || || || ||||| || ||||| Sbjct 558 ACATCCAGAGTGATGGTCTTGCCCGTGAGCGTCTTGACAAAGATCTGCAT 607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362133576286176