Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20mitis_20[genbank_20GCA_5F000499745.1_202013-11-06] 10,336 sequences; 60,415,144 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq4538 91.5 1e-13 >seq4538 Length=22927 Score = 91.5 bits (100), Expect = 1e-13 Identities = 120/162 (74%), Gaps = 6/162 (4%) Strand=Plus/Plus Query 12859 TTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATT 12918 ||| || || || | ||| | ||||||||| || ||||||||||||| ||| ||||| Sbjct 8274 TTTCTGGTAATCACCAACACGTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGAAATTAA 8333 Query 12919 TTCCATAAAATCGAAAGGATTTTTCGAA--CAATAGTATTTTTTACACCCTAATTCTAGT 12976 |||||||| || |||||||| |||| |||| | |||| | | ||| || | ||| Sbjct 8334 ATCCATAAAGTCAAAAGGATTACGCGAATTGAATA-TTTTTTCTCCCCCCAAA--CAAGT 8390 Query 12977 -AACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAA 13017 | ||| | |||||||||||||| || ||||| |||||| Sbjct 8391 CAGCAAACGATCAGCAACAAACTCAATATACTGCGACATTAA 8432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430928109147072