Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20mitis_20[genbank_20GCA_5F000499745.1_202013-11-06] 10,336 sequences; 60,415,144 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq7029 163 3e-35 >seq7029 Length=3465 Score = 163 bits (180), Expect = 3e-35 Identities = 330/484 (68%), Gaps = 27/484 (6%) Strand=Plus/Minus Query 164503 GGCTGTAAACATATAAAAGGAATTTTATTAC---ATGGACCTCCTGGTTGCGGTAAAACA 164559 ||||| |||||| ||||||| |||||||| |||| || || || || |||||| Sbjct 1913 GGCTG-AAACATGTAAAAGG---TTTATTACTTTATGGGCCCCCAGGAACGGGAAAAACA 1858 Query 164560 TTAATGGCTCGATGCATTGCTCAAGCTTTTAAATC--GCGACCCGTTAAAATTGTTAATG 164617 | || ||| || || | |||| || ||| | | || || ||| | || |||| Sbjct 1857 CTGATAGCTAGACAGATAGGGAAAGCGTTGAAAGCTAGAGAACC--TAAGGTAGTGAATG 1800 Query 164618 GTCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTC 164677 | || ||| |||| || |||| ||| ||| | || || | ||||| ||| || ||| Sbjct 1799 GGCCCGAAATATTAAATAAATTTGTTGGTCAATCCGAGGAAAATGTAAGAGCTTTATTTA 1740 Query 164678 AGGAGGCTGAAGAAGAACAAAAGAAAGCAGGTTTAGCTAGTAAA--TTACATGTTATTGT 164735 | || || ||||||||| |||| ||| ||| || ||| || |||||| | ||| | Sbjct 1739 AAGAAGCAGAAGAAGAAGAAAAAAAAAAAGGAAAAG--AGTCAAGTTTACATATAATTAT 1682 Query 164736 TTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGGTGATAATATTA----TTCATG--- 164788 || ||||| |||||||| |||| ||| || | || | ||| | |||| | Sbjct 1681 ATTCGATGAATTAGATGCTATTTGTAAACAAAGAGGAGCAAATCCTGGTGGTTCAGGTGT 1622 Query 164789 -----ATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAA 164843 || |||| || ||||| || || || || |||||||||||| | | |||||||| Sbjct 1621 TACGGATTCAGTAGTAAATCAATTACTATCAAAGATAGATGGTGTAAATGCATTAAATAA 1562 Query 164844 TATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACC 164903 ||| ||| | |||| ||||| || || |||||||| ||||| |||||| | |||| Sbjct 1561 TATATTACTAATAGGAATGACAAATAGAATAGATTTAATAGATGAAGCTTTACTGAGACC 1502 Query 164904 TGGTCGATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAAT 164963 || || || || | || |||||||| ||||| || | | |||| | | ||||| Sbjct 1501 AGGACGTTTTGAGGTTCTTATTGAAATAGGTTTACCTGATACAAAAGGTAGATTACAAAT 1442 Query 164964 TTTA 164967 |||| Sbjct 1441 TTTA 1438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595795013337600