Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20mitis_20[genbank_20GCA_5F000499745.1_202013-11-06] 10,336 sequences; 60,415,144 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq3225 113 4e-20 >seq3225 Length=28280 Score = 113 bits (124), Expect = 4e-20 Identities = 167/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || || ||||||| || | || || || | |||||||| || || | || | Sbjct 145 TTTGCATGCCACCTCTCAGGCGAAGAACTAAATGAAGGGTAGATTCTTTCTGAATATTGT 204 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | ||| || || | ||| || ||||||||||| | || || | | ||||||| Sbjct 205 AGTCGGACAGCGTTCTACCATCTTCTAGCTGTTTTCCAGCGAAAATGAGACGCTGCTGAT 264 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 | |||||||||||||| ||||| | ||| ||||| || ||| ||| || || | Sbjct 265 CAGGAGGAATACCTTCCTTGTCCTGAATCTTTGCTTTCACGTTTTCGATGGTATCTGATG 324 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | || || || | |||||||| || ||||| ||||| ||||||||||| ||||||| Sbjct 325 GCTCAACATCCAGAGTGATGGTCTTGCCAGTCAGAGTCTTCACAAAGATTTGCATGC 381 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || || ||||||| || | |||| || | |||||||| || || | ||| | Sbjct 373 TTTGCATGCCACCTCTCAGGCGGAGTACCAGATGAAGGGTAGATTCTTTCTGAATGTTGT 432 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | ||| || || || ||| |||||||| || ||| | || || | | ||||| | Sbjct 433 AGTCGGACAGTGTCCTGCCATCTTCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGT 492 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 | ||||| ||||| || ||||| | ||| ||||| || ||| | | ||| || | Sbjct 493 CAGGAGGGATACCCTCCTTGTCCTGAATCTTTGCTTTCACGTTCTCTATAGTATCTGATG 552 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | |||||||| || || || || || || |||||||||||||| Sbjct 553 GCTCAACATCCAGAGTGATGGTCTTGCCCGTGAGCGTCTTGACAAAGATCTGCAT 607 Score = 87.8 bits (96), Expect = 2e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| |||||| | || || | | |||||||| |||||||||||||| ||||| | | Sbjct 3 AGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCAGGAGGAATACCTTCCTTGTCCTGA 62 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || ||||| || ||| | | || || | | || || || | ||||| || || Sbjct 63 ATCTTTGCTTTCACGTTTTCAATGGTATCTGATGGCTCAACATCCAAGGTGATCGTCTTG 122 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||||| ||||| ||||| ||||| ||||||| Sbjct 123 CCAGTCAGAGTCTTCACGAAGATTTGCATGC 153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448233280776960