Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20mitis_20[genbank_20GCA_5F000499745.1_202013-11-06] 10,336 sequences; 60,415,144 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq3103 111 2e-19 >seq3103 Length=10288 Score = 111 bits (122), Expect = 2e-19 Identities = 298/455 (65%), Gaps = 22/455 (5%) Strand=Plus/Plus Query 62626 ATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTAT 62685 ||||| | |||||||| || ||||| ||||||| | || ||||| | || Sbjct 373 ATGCAGCATAATAAATACACTCAAAGATAGATTTATTTAATTGTTTAGCTTCTATAGAAT 432 Query 62686 CAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAG 62745 ||||||| || ||||| | || ||| |||| |||| || || ||||| ||||| || | Sbjct 433 CAAATGGGTATTTTAATATAAGAAAGACGTCAGCTAGGCCCTGTACACCTATACCTATGG 492 Query 62746 GTCTATGTCTCTTATTAGAGATTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATA 62804 |||| ||| | || || | | || || || || | |||||| | || ||||||| Sbjct 493 GTCTGTGTTTTTTGTT-GCTCTCTCTCGCCTCGGGGAGAGGATAGAAGTTGTTATCTATT 551 Query 62805 ATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGA-AAATCAAA 62863 |||||||| |||||| || ||||| || || | || || | | |||| |||||||| Sbjct 552 ATTTTATTTAGATTTATGGTGATTACCTTTACTATATATTTTAATA-GAGAGAAATCAAA 610 Query 62864 ------------------TCGCCCATCTATTACAAACATGTTCAAGGCAACAGATGCCAG 62905 | | | | ||| | | | || | | |||||| || Sbjct 611 GAAATATTTATTTGTTTTTTTTTCTTTTTTTATACATTTAGGTAAAGATATAGATGCTAG 670 Query 62906 ATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACT 62965 ||||| || ||||| || | || | |||||||||||| ||| || | |||||| Sbjct 671 GTTACATACAGCTACTTCTTCTTTATTTGTATATTGTATTATTTCACAACATAAATTACT 730 Query 62966 ACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAG 63025 | ||| ||||||| |||||||||||||||| | || || ||||| ||||| | Sbjct 731 CGATCGTATACACCCTAAATGTTGTTGATTACTCTTTCTATTGCATGCATCTTTATATAA 790 Query 63026 AATGAATGGAGTACCAGTTTCAATCTGAGATTCTA 63060 || |||| || || || || ||||| | || || Sbjct 791 CATATATGGTGTTCCTGTCTCTATCTGTGCTTGTA 825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622866715221760