Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eimeria_20mitis_20[genbank_20GCA_5F000499745.1_202013-11-06]
10,336 sequences; 60,415,144 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq3225 107 2e-18
>seq3225
Length=28280
Score = 107 bits (118), Expect = 2e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | ||||| || || | ||||| || | || || | || || ||| ||| |
Sbjct 379 ATGCAAATCTTTGTGAAGACTCTGACTGGCAAGACCATCACTCTGGATGTTGAG-CCATC 321
Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109
|| |||||||| | || ||| ||||||| ||||| ||||| || ||||| |||||
Sbjct 320 AGATACCATCGAAAACGTGAAAGCAAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCA 261
Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169
||| | || |||| || || || || || ||||||| |||| | ||| || ||
Sbjct 260 GCAGCGTCTCATTTTCGCTGGAAAACAGCTAGAAGATGGTAGAACGCTGTCCGACTACAA 201
Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217
||||| ||||||||||| |||||||||| | | ||||||| ||
Sbjct 200 TATTCAGAAAGAATCTACCCTTCATTTAGTTCTTCGCCTGAGAGGTGG 153
Score = 98.7 bits (108), Expect = 9e-16
Identities = 164/231 (71%), Gaps = 6/231 (3%)
Strand=Plus/Minus
Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049
|||||| | ||||| || || | || || || | || || | || || ||| |||
Sbjct 608 AATGCAGATCTTTGTCAAGACGCTCACGGGCAAGACCATCACTCTGGATGTTGAG-CCAT 550
Query 24050 C-GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATC 24108
| || || || ||| | || ||| ||||||| ||||| || || || ||||| || |
Sbjct 549 CAGATACTATAGAGAACGTGAAAGCAAAGATTCAGGACAAGGAGGGTATCCCTCCTGACC 490
Query 24109 AACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAA-AC-GTCAGCGATTA 24166
| ||| | || |||| || ||||||||| || ||||||| ||| | || ||| ||| ||
Sbjct 489 AGCAGCGTCTCATTTTCGCCGGCAAGCAGCTGGAAGATGGCAGGACACTGTC--CGACTA 432
Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217
|||||||| ||||||||||| ||||| | || | | ||||||| ||
Sbjct 431 CAACATTCAGAAAGAATCTACCCTTCATCTGGTACTCCGCCTGAGAGGTGG 381
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429881840962080
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |