Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20mitis_20[genbank_20GCA_5F000499745.1_202013-11-06] 10,336 sequences; 60,415,144 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq3647 109 4e-19 seq6434 100 2e-16 seq5880 100 2e-16 seq3225 84.2 1e-11 >seq3647 Length=8413 Score = 109 bits (120), Expect = 4e-19 Identities = 72/80 (90%), Gaps = 5/80 (6%) Strand=Plus/Plus Query 25914 TTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCAT 25968 |||||||||||||||||||||||||||||||| || |||||||||||||| ||||| Sbjct 8094 TTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCAT 8153 Query 25969 GCGCGTCACTAATTAGATGA 25988 || ||||||||||||||||| Sbjct 8154 GCACGTCACTAATTAGATGA 8173 >seq6434 Length=18245 Score = 100 bits (110), Expect = 2e-16 Identities = 79/95 (83%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| |||||||||| ||||||| |||| |||||||||||||||| ||| || | || Sbjct 5080 AAGACCGTTCCCTTAGCTGTGGGTTCGTTAGATAGTAGATAGGGAGAGTGGTGATATTGT 5021 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||| | ||||||| |||||| ||||||||||||| Sbjct 5020 TAATTCATTCATGCACGTCACAAATTAGATGACGA 4986 >seq5880 Length=4592 Score = 100 bits (110), Expect = 2e-16 Identities = 70/80 (88%), Gaps = 5/80 (6%) Strand=Plus/Minus Query 25914 TTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCAT 25968 |||||||||||||||||||||||||||||||| || |||||| ||| ||| ||||| Sbjct 316 TTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCCTTAGTCCATTCAT 257 Query 25969 GCGCGTCACTAATTAGATGA 25988 || ||||||||||||||||| Sbjct 256 GCACGTCACTAATTAGATGA 237 >seq3225 Length=28280 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/232 (68%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 |||||||||| || | || |||||||| || || || ||||||||||| || ||| Sbjct 153 CCACCTCTCAGGCGAAGAACTAAATGAAGGGTAGATTCTTTCTGAATATTGTAGTCGGAC 212 Query 38151 AAAACACGTT----CGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGA 38206 | |||| | || |||| |||||||| || || || || || || ||||| | Sbjct 213 A----GCGTTCTACCATCTTCTAGCTGTTTTCCAGCGAAAATGAGACGCTGCTGATCAGG 268 Query 38207 GGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTC 38266 || | ||||| |||||| ||| ||| ||||| || | || |||||| || Sbjct 269 AGGAATACCTTCCTTGTCCTGAATCTTTGCTTTCACGTTTTCGATGGTATCTGATGGCTC 328 Query 38267 AACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 ||| || | || || || || || |||| || ||||| || || |||||| Sbjct 329 AACATCCAGAGTGATGGTCTTGCCAGTCAGAGTCTTCACAAAGATTTGCATG 380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334905006701216