Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20mitis_20[genbank_20GCA_5F000499745.1_202013-11-06] 10,336 sequences; 60,415,144 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq3225 93.3 4e-14 >seq3225 Length=28280 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| ||||| || || |||| ||||| ||||| || |||| || || Sbjct 379 ATGCAAATCTTTGTGAAGACTCTGACTGGCAAGACCATCACTCTGGATGTTGAGCCATCA 320 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | | | | || ||| ||| ||| ||||| ||||| |||| ||||| Sbjct 319 GATACCATCGAAAACGTGAAAGCAAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAG 260 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || | || |||| || || ||||| | |||||| || ||| || |||| || ||| Sbjct 259 CAGCGTCTCATTTTCGCTGGAAAACAGCTAGAAGATGGTAGAACGCTGTCCGACTACAAT 200 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 || || ||||||||||| || |||||||| | || ||| | ||||||| Sbjct 199 ATTCAGAAAGAATCTACCCTTCATTTAGTTCTTCGCCTGAGAGGTGGCA 151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422986709651200