Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20mitis_20[genbank_20GCA_5F000499745.1_202013-11-06] 10,336 sequences; 60,415,144 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq3225 183 6e-41 seq4858 84.2 4e-11 seq4441 84.2 4e-11 >seq3225 Length=28280 Score = 183 bits (202), Expect = 6e-41 Identities = 172/219 (79%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||| | ||||| || || || || ||||| || ||||| || ||||| |||||||| Sbjct 390 AGGCGGAGTACCAGATGAAGGGTAGATTCTTTCTGAATGTTGTAGTCGGACAGTGTCCTG 449 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| |||||||| ||||| | || ||||| || || || || ||| Sbjct 450 CCATCTTCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCAGGAGGGATACCCTCC 509 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| ||||||||||| || ||| ||| || || |||| || || || |||| ||| Sbjct 510 TTGTCCTGAATCTTTGCTTTCACGTTCTCTATAGTATCTGATGGCTCAACATCCAGAGTG 569 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||||| || |||||||| |||||||| || ||||||||| Sbjct 570 ATGGTCTTGCCCGTGAGCGTCTTGACAAAGATCTGCATT 608 Score = 150 bits (166), Expect = 3e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||| | || || || || || || ||||| || || || || ||||| || || || Sbjct 162 AGGCGAAGAACTAAATGAAGGGTAGATTCTTTCTGAATATTGTAGTCGGACAGCGTTCTA 221 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||||| ||| || || ||||| ||||| | || || || || ||||| |||||| Sbjct 222 CCATCTTCTAGCTGTTTTCCAGCGAAAATGAGACGCTGCTGATCAGGAGGAATACCTTCC 281 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| ||||||||||| || ||| |||||||| |||| || || || |||| ||| Sbjct 282 TTGTCCTGAATCTTTGCTTTCACGTTTTCGATGGTATCTGATGGCTCAACATCCAGAGTG 341 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || || ||||| || || || ||||| Sbjct 342 ATGGTCTTGCCAGTCAGAGTCTTCACAAAGATTTGCAT 379 Score = 122 bits (134), Expect = 2e-22 Identities = 115/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 68315 CTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAAT 68374 |||||| |||||||| ||||| | || || || || ||||| ||||||||||| ||||| Sbjct 5 CTGCTTTCCGGCGAAAATGAGACGCTGCTGATCAGGAGGAATACCTTCCTTGTCCTGAAT 64 Query 68375 CTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCC 68434 |||||| || ||| || ||||| |||| || || || ||||||||||| || || || Sbjct 65 CTTTGCTTTCACGTTTTCAATGGTATCTGATGGCTCAACATCCAAGGTGATCGTCTTGCC 124 Query 68435 CGTGAGGGTCTTGACGAATATCTGCAT 68461 || || ||||| ||||| || ||||| Sbjct 125 AGTCAGAGTCTTCACGAAGATTTGCAT 151 >seq4858 Length=24771 Score = 84.2 bits (92), Expect = 4e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGcccc 84518 |||||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| Sbjct 3183 TAGCTCAGTCGGTAGAGCGCGAGGCTCTTAACCTCGTGGTCGCGGGTTCGAGCCCC 3238 >seq4441 Length=6590 Score = 84.2 bits (92), Expect = 4e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGcccc 84518 |||||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| Sbjct 848 TAGCTCAGTCGGTAGAGCGCGAGGCTCTTAACCTCGTGGTCGCGGGTTCGAGCCCC 793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921503326385920