Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20mitis_20[genbank_20GCA_5F000499745.1_202013-11-06] 10,336 sequences; 60,415,144 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq3225 138 1e-27 >seq3225 Length=28280 Score = 138 bits (152), Expect = 1e-27 Identities = 157/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||||||||| | ||||||||||| ||||| ||||| ||| || || | | |||||| Sbjct 170 AACTAAATGAAGGGTAGATTCTTTCTGAATATTGTAGTCGGACAGCGTTCTACCATCTTC 229 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 || ||||| |||||| | ||||||||||| || || |||||||| ||||| ||||| Sbjct 230 TAGCTGTTTTCCAGCGAAAATGAGACGCTGCTGATCAGGAGGAATACCTTCCTTGTCCTG 289 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 ||||||| ||| | | ||| | ||| || | | || || |||| || | || || Sbjct 290 AATCTTTGCTTTCACGTTTTCGATGGTATCTGATGGCTCAACATCCAGAGTGATGGTCTT 349 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 ||| |||||||| || ||||| || |||||| Sbjct 350 GCCAGTCAGAGTCTTCACAAAGATTTGCATG 380 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||||||||| ||||||||||| ||| || || | |||||| || || || || Sbjct 411 GTAGATTCTTTCTGAATGTTGTAGTCGGACAGTGTCCTGCCATCTTCCAGCTGCTTGCCG 470 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| | ||||||||||| ||||| ||||| || || || ||||| ||||||| ||| Sbjct 471 GCGAAAATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGAATCTTTGCTTTC 530 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | || || | | || || |||| || | || ||||| || || || Sbjct 531 ACGTTCTCTATAGTATCTGATGGCTCAACATCCAGAGTGATGGTCTTGCCCGTGAGCGTC 590 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 591 TTGACAAAGATCTGCAT 607 Score = 95.1 bits (104), Expect = 1e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 || || || || ||| | ||||||||||| || || |||||||| ||||| ||||| | Sbjct 3 AGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCAGGAGGAATACCTTCCTTGTCCTGA 62 Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353 |||||| ||| | | ||||| ||| || | | || || |||| ||| | ||| ||| Sbjct 63 ATCTTTGCTTTCACGTTTTCAATGGTATCTGATGGCTCAACATCCAAGGTGATCGTCTTG 122 Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||||||| || || || || |||||| Sbjct 123 CCAGTCAGAGTCTTCACGAAGATTTGCATG 152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420081475669632