Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20mitis_20[genbank_20GCA_5F000499745.1_202013-11-06] 10,336 sequences; 60,415,144 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq3225 140 8e-28 >seq3225 Length=28280 Score = 140 bits (154), Expect = 8e-28 Identities = 171/232 (74%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| | || | ||| || | ||||| || |||||| || ||||| |||| Sbjct 149 CATG-CCACCTCTCAGGCGAAGAACTAAATGAAGGGTAGATTCTTTCTGAATATTGTAGT 207 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| ||||| | || ||||||| |||||||| ||||| || |||||||| ||| | Sbjct 208 CGGACAGCGTTCTACCATCTTCTAGCTGTTTTCCAGCGAAAATGAGACGCTGCTGATCAG 267 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 || || ||||| || ||||| || || |||||||||||||| || | ||| | | Sbjct 268 GAGGAATACCTTCCTTGTCCTGAATCTTTGCTTTCACGTTTTCGATGGTATCTGATGGCT 327 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || || ||||| ||||| || ||||||||||| || || || ||||| Sbjct 328 CAACATCCAGAGTGATGGTCTTGCCAGTCAGAGTCTTCACAAAGATTTGCAT 379 Score = 123 bits (136), Expect = 6e-23 Identities = 168/233 (72%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| | || | ||||| ||||||| || |||||| || || || |||| Sbjct 377 CATG-CCACCTCTCAGGCGGAGTACCAGATGAAGGGTAGATTCTTTCTGAATGTTGTAGT 435 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| || || | || ||||| | || || || ||||| || |||||||| || | Sbjct 436 CGGACAGTGTCCTGCCATCTTCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCAG 495 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| || || || ||||| || || ||||||||||| ||||||| ||| | | Sbjct 496 GAGGGATACCCTCCTTGTCCTGAATCTTTGCTTTCACGTTCTCTATAGTATCTGATGGCT 555 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 | || || || ||||| ||||| || || || |||||||| || ||||||||| Sbjct 556 CAACATCCAGAGTGATGGTCTTGCCCGTGAGCGTCTTGACAAAGATCTGCATT 608 Score = 102 bits (112), Expect = 2e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 288328 TGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATT 288387 || ||||| ||||| || |||||||| ||| | || || ||||| || ||||| || Sbjct 6 TGCTTTCCGGCGAAAATGAGACGCTGCTGATCAGGAGGAATACCTTCCTTGTCCTGAATC 65 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 || |||||||||||||| || | ||| | || || || | ||||||||||| || Sbjct 66 TTTGCTTTCACGTTTTCAATGGTATCTGATGGCTCAACATCCAAGGTGATCGTCTTGCCA 125 Query 288448 GTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||||||| ||||| || ||||| Sbjct 126 GTCAGAGTCTTCACGAAGATTTGCAT 151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179498178367808