Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20mitis_20[genbank_20GCA_5F000499745.1_202013-11-06] 10,336 sequences; 60,415,144 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq3225 129 4e-25 >seq3225 Length=28280 Score = 129 bits (142), Expect = 4e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||||| || | | |||||||||||||||||| ||||| || || ||||| ||| Sbjct 151 TGCCACCTCTCAGGCGAAGAACTAAATGAAGGGTAGATTCTTTCTGAATATTGTAGTCGG 210 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 || |||| | ||||||| ||||| |||||| | || | |||||| || || | Sbjct 211 ACAGCGTTCTACCATCTTCTAGCTGTTTTCCAGCGAAAATGAGACGCTGCTGATCAGGAG 270 Query 15068 GAATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126 |||| ||||||||||| ||| ||||| ||| || |||| || ||||| || Sbjct 271 GAATACCTTCCTTGTCCTGAATCTTTGC-TTTCACGTTTTCGATGGTATCTGATGGCTCA 329 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || | || ||||| || || |||||||| || ||||| |||||||| Sbjct 330 ACATCCAGAGTGATGGTCTTGCCAGTCAGAGTCTTCACAAAGATTTGCAT 379 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||||| || | | || | |||||||||||| ||||| || |||||||| ||| Sbjct 379 TGCCACCTCTCAGGCGGAGTACCAGATGAAGGGTAGATTCTTTCTGAATGTTGTAGTCGG 438 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 || | || | ||||| | || ||||| ||| | || | |||||| ||||| | Sbjct 439 ACAGTGTCCTGCCATCTTCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCAGGAG 498 Query 15068 GAATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126 | || || |||||||| ||| ||||| ||| || | ||||||||||| || Sbjct 499 GGATACCCTCCTTGTCCTGAATCTTTGC-TTTCACGTTCTCTATAGTATCTGATGGCTCA 557 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || | || ||||| || || || || || || ||||| || ||||| Sbjct 558 ACATCCAGAGTGATGGTCTTGCCCGTGAGCGTCTTGACAAAGATCTGCAT 607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357346979329760