Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20mitis_20[genbank_20GCA_5F000499745.1_202013-11-06] 10,336 sequences; 60,415,144 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq3225 122 1e-22 >seq3225 Length=28280 Score = 122 bits (134), Expect = 1e-22 Identities = 172/238 (72%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| ||||| | || | |||||||| | ||| || || || || |||||||||| Sbjct 379 TGCCACCTCTCAGGCGGAGTACCAGATGAAGGGTAGATTCTTTCTGAATGTTGTAGTCGG 438 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || || | | || || ||||||||||||||||| || | ||||||||||| | | Sbjct 439 ACAGTGTCCTGCCATCTTCCAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCAGGAG 498 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCG-TCGCCACCGTGTCGCTCGATTCC 46543 | | | |||||||||| ||||| | ||| || || | | || || | || Sbjct 499 GGATACCCTCCTTGTCCTGAATCTT-TGCTTTCACGTTCTCTATAGTATCTGATGGCTCA 557 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT-TTGCAC 46600 ||||||| |||||||| |||||||| ||||| || |||||||| |||||| |||||| Sbjct 558 ACATCCAGAGTGATGGTCTTGCCCGTGAGCGTCTTGACAAAGATCTGCATTGTTGCAC 615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565165371198720