Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20mitis_20[genbank_20GCA_5F000499745.1_202013-11-06] 10,336 sequences; 60,415,144 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq3727 239 2e-57 seq4039 210 9e-49 seq4291 161 4e-34 seq3225 147 9e-30 seq4910 86.0 2e-11 >seq3727 Length=8307 Score = 239 bits (264), Expect = 2e-57 Identities = 388/557 (70%), Gaps = 6/557 (1%) Strand=Plus/Minus Query 451989 TAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTT 452048 ||||||||||||||||||||||||||||||| || || || |||||||| ||| ||| Sbjct 643 TAAATCCTGATGAAGCTGTTGCATATGGTGCAGCTGTACAGGCAGCTATATTAAAAGGAG 584 Query 452049 CAGATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAG 452108 | || | | || || |||| || |||| | ||||| | ||||| |||||||| Sbjct 583 TAAATAGTTCACAAGTACAAGATCTTTTGTTGCTTGATGTTGCTCCTCTTTCTCTTGGTC 524 Query 452109 TTGAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAGGAACTTCTATTCCTTGTA 452168 | ||||||||||| ||| | ||||| || ||||| || || || | |||||| | Sbjct 523 TAGAAACAGCTGGAGGAGTAATGACGAAATTAATAGAAAGAAATACAACAATTCCTACAA 464 Query 452169 AAAAGAGTCAAACATTTAGTACA---GCAAGTGATAACCAACCAGGTGTAACTATTCAAG 452225 |||| |||| ||| | ||| ||| || || ||||| |||||| ||| |||| Sbjct 463 AAAAATCACAAATATTCACAACATATGCA---GACAATCAACCGGGTGTACTTATACAAG 407 Query 452226 TGTTTGAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGGAGAATTTACTCTTT 452285 | || || |||||| | ||||||||| |||||||||| | |||| | ||| |||| Sbjct 406 TTTTCGAGGGAGAAAGAGCAATGACAAAAGATAATAATTTATTAGGCAAGTTTCATCTTG 347 Query 452286 CAAACATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTATGATGTTGATG 452345 ||||||||| ||||| ||| || ||||| ||| |||| | ||| | |||| Sbjct 346 ATGGTATTCCTCCTGCACCAAGAGGAGTACCCCAAATAGAAGTTACTTTCGATATAGATG 287 Query 452346 CAAATGGTATTCTTAATGTGAGTGCAGTTGAAAAATCATCTGGAAAATCAGAAAAAATTA 452405 ||||||| ||| | ||||| | ||| |||||| | ||||| ||| | | || | Sbjct 286 CAAATGGCATTATGAATGTTACAGCAACAGAAAAAAATACAGGAAAGTCAAACCAGATCA 227 Query 452406 CAATTACTAATGATAAAAACCGTTTATCTAAAGAAGATATTGAAAAAATGGTAGATGAAG 452465 | || || |||||||| | || | | | || || || | |||||||| |||| Sbjct 226 CCATCACCAATGATAAGGGTAGACTAAGTCAGGGTGAGATAGATAGAATGGTAGCCGAAG 167 Query 452466 CAGAAAAATTCAAGGATGATGATGAACAAGTTAGAAAACATGTTGAAGCTAAAAACAAAC 452525 |||| |||| || | || |||||| | || | ||| ||| |||||||| || || Sbjct 166 CAGAGAAATATAAAGCCGAAGATGAAGCAAATAAACAACGTGTAGAAGCTAAGAATGCAC 107 Query 452526 TAGAAGGATATTGTTAT 452542 | ||| ||||||||| Sbjct 106 TTGAAAATTATTGTTAT 90 Score = 226 bits (250), Expect = 1e-53 Identities = 478/710 (67%), Gaps = 10/710 (1%) Strand=Plus/Minus Query 450913 AGCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAA 450972 |||| |||| |||||||| |||||||| | ||| || || || || | |||| | Sbjct 1793 AGCAGTTGGTATTGATCTAGGAACCACGTATTCTTGCGTGGGGGTATGGAAAAACGATGG 1734 Query 450973 TGTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTAC 451032 |||||| || ||||| || || |||||| |||| || ||||| | || || || Sbjct 1733 TGTAGAGATAATAGCGAACGATCAAGGAAACAGAACAACACCTTCTTATGTTGCATTCAC 1674 Query 451033 GGATTCAGAAAGACTTTTAGGGCAAGCTGCTAAAT--CAATGGTAAATTCAAATGCCAAA 451090 ||| |||| |||||| |||| | || || ||| ||| ||| ||| | || Sbjct 1673 CGATACAGAGAGACTTGTAGGAGATGCAGCAAAAAACCAA--GTAGCAAGAAACCCAGAA 1616 Query 451091 AACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAA 451150 || ||||||| |||||| ||| | ||||| || | | || ||| ||| ||||||| Sbjct 1615 AATACAGTATTTGATGCAAAAAGATTAATAGGAAGAAAGTTTGACGATCCAGCTGTACAG 1556 Query 451151 AAAGAGAAAAAATTCTTTTCTTATGATGT---AGTAAATCAAAAAGGAAAGCCCTATATT 451207 ||| | ||| || ||| | ||| || | | | ||| || || ||| Sbjct 1555 GCAGATATGAAACACTGGCCTTTTACTGTGAAAGCAGGACCAGGAGGTAAACCACTTATA 1496 Query 451208 CAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTT 451267 ||||||| ||| |||| || ||||| ||| || |||||||| ||| | ||||| Sbjct 1495 GAAGTAAACTATCAAGGAACAAAAAAAACATTTCACCCAGAAGAAATATCAGCAATGGTA 1436 Query 451268 CTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTA 451327 | | || |||||||| | ||| ||| | ||| || ||| | || || ||| Sbjct 1435 TTAATGAAGATGAAAGAGATAGCTGAAGCTTTTATAGGAAAAGAAGTCAAAGAAGCTGTA 1376 Query 451328 ATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACAT 451387 ||||| ||||| || |||||||||||| ||||| | |||||||| ||||||||||| | Sbjct 1375 ATTACAGTTCCTGCATATTTCAATGATTCACAAAGACAAGCAACAAAAGATGCAGGTACT 1316 Query 451388 ATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATAT 451447 || || || | || || | || ||||| ||||||||||||||||| ||| | || ||| Sbjct 1315 ATAGCGGGGCTGAACGTATTACGTATTATAAATGAACCTACAGCAGCAGCTATTGCTTAT 1256 Query 451448 GGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGA 451507 || ||| || ||||| | | ||| | ||| | | | || ||| | || ||| Sbjct 1255 GGTTTAGATAA---AAAAGGACATGGAGAGATGAATGTACTTATTTTCGATATGGGGGGA 1199 Query 451508 GGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACC 451567 || ||| ||| |||| | ||| | || ||||| || | ||||| || || || || Sbjct 1198 GGTACTTTTGACGTTTCTTTGCTTACTATAGAAGACGGTATCTTTGAGGTGAAAGCTACA 1139 Query 451568 AATGGTGATACTCATCTAGGAGGTGAAGATATTGATAATGCAATTGTGGA 451617 || ||||| ||| |||| || |||||| | || ||| | |||| || Sbjct 1138 GCAGGAGATACACATTTAGGGGGAGAAGATTTCGACAATAGACTTGTAGA 1089 >seq4039 Length=7894 Score = 210 bits (232), Expect = 9e-49 Identities = 548/829 (66%), Gaps = 35/829 (4%) Strand=Plus/Plus Query 451730 ACACAAACTACTAGTATAAACATTGAT--AGTTTAGTTGATGGAATGGATTATGCTACTA 451787 |||||| |||||| || | || ||| | ||| |||| || || ||||| || | Sbjct 116 ACACAAGCTACTA---TAGAAATAGATTCACTTT--TTGAGGGTATTGATTACTCTGTTT 170 Query 451788 CTCTTACCCGTGCTAAATTTGAATCAATTTGTTCCAGTATTTTTGCACGGGTAATGAA-- 451845 ||||| | ||||||| ||| ||| | ||||| | ||| | || | ||| | Sbjct 171 CTCTTTCTCGTGCTAGATTCGAAGAACTTTGTAT--GGATTACTTCA---GAAATTCACT 225 Query 451846 ---ACCTGTTGATCAAGTATTACATGATTCTAAAATTAGTAAAGATAA---AATTG---A 451896 |||||| || ||||||| | ||| | | ||| |||||| || || | Sbjct 226 TGTACCTGTAGAGAAAGTATTGAAGGAT------AGTGGTATAGATAAGCGAAGTGTACA 279 Query 451897 TGAAATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTTGTCTTC 451956 |||| |||| | || ||||| || ||| |||| || || || ||| | | | Sbjct 280 TGAAGTTGTATTGGTGGGAGGATCAACAAGAATACCGAAGATACAACAACTTATACAAGA 339 Query 451957 TTATTTTGGAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGG 452016 | |||| |||||| ||| |||| |||| || ||||| |||||||||||||| Sbjct 340 ATTTTTTAACGGAAAAGAACCATGTCGTTCTATAAACCCAGATGAGGCTGTTGCATATGG 399 Query 452017 TGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCAGATGATGAAAAATTAGGAGATATTCT 452076 ||| || || || |||||||| ||| ||| | || | | || || |||| || | Sbjct 400 TGCAGCTGTACAGGCAGCTATATTAAAAGGAGTAAATAGTTCACAAGTACAAGATCTTTT 459 Query 452077 GTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTAA 452136 ||| | ||||| | ||||| |||||||| | || ||||| || || ||||||| || Sbjct 460 GTTGCTTGATGTTGCTCCTCTTTCTCTTGGTCTAGAGACAGCAGGAGGTGTGATGACGAA 519 Query 452137 TTTAATTAAACGAGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACA---GC 452193 ||||| || || || | |||||| ||||| |||| ||| | ||| || Sbjct 520 ATTAATAGAAAGAAATACAACAATTCCTACAAAAAAATCACAAATATTCACAACATATGC 579 Query 452194 AAGTGATAACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACG 452253 | || || ||||| |||||| ||| ||||| || || |||||| | ||||||||| Sbjct 580 A---GACAATCAACCGGGTGTACTTATACAAGTTTTCGAGGGAGAAAGAGCAATGACAAA 636 Query 452254 AGATAATAATAAACTAGGAGAATTTACTCTTTCAAACATTCCTCCTATGCCAAGGGGAAC 452313 |||||||||| | |||| | ||| |||| ||||||||| ||||| ||| Sbjct 637 AGATAATAATTTATTAGGCAAGTTTCATCTTGATGGTATTCCTCCTGCACCAAGAGGAGT 696 Query 452314 TCCTCAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGT 452373 || ||||| ||| |||| | ||| | ||||||||||| ||| | ||||| | ||| Sbjct 697 ACCCCAAATAGAAGTTACTTTCGATATAGATGCAAATGGCATTATGAATGTTACAGCAAC 756 Query 452374 TGAAAAATCATCTGGAAAATCAGAAAAAATTACAATTACTAATGATAAAAACCGTTTATC 452433 |||||| | ||||| ||| | | || || || || |||||||| | || Sbjct 757 AGAAAAAAATACAGGAAAGTCAAACCAGATCACCATCACCAATGATAAGGGTAGACTAAG 816 Query 452434 TAAAGAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGATGATGATGAACA 452493 | | | || || || | |||||| | ||| || || |||| || | || |||||| Sbjct 817 TCAGGGTGAGATAGATAGAATGGTTGCTGAGGCGGAGAAATATAAAGCCGAAGATGAAGC 876 Query 452494 AGTTAGAAAACATGTTGAAGCTAAAAACAAACTAGAAGGATATTGTTAT 452542 | || | ||| ||| |||||||| || ||| ||| ||||||||| Sbjct 877 AAATAAACAACGTGTAGAAGCTAAGAATGCACTTGAAAATTATTGTTAT 925 >seq4291 Length=7478 Score = 161 bits (178), Expect = 4e-34 Identities = 268/386 (69%), Gaps = 11/386 (3%) Strand=Plus/Minus Query 451182 TAAATCAAAAAGGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTG 451241 ||||| || | ||||| || ||||||| || | | ||||| || | ||| ||| Sbjct 4410 TAAATAAAGATGGAAAACCATATATTCGTGTTACTGTAAAAGGGCAACCAAAAGAACTTG 4351 Query 451242 CTCCTGAAGAAATTTCATCTATGGTTCTTACTAAA-ATGAAAGAAACAGCAGAACAATAT 451300 |||| || || ||||| ||||||| ||| ||| ||||||||| ||||||| | ||| Sbjct 4350 CTCCCGAGGAGGTTTCAGCTATGGTA-TTAGGAAAGATGAAAGAAGTAGCAGAAAACTAT 4292 Query 451301 ATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAA 451360 | || ||| | |||| || ||||||| || || || || |||||||| || Sbjct 4291 CTAGGGAGAGAAGTAAAGAATGCTGTTGTTACTGTACCTGCATACTTTAATGATGCTCAG 4232 Query 451361 CGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAAT 451420 || ||||| || |||||||||||| |||||| ||| | |||||| |||| || || ||| Sbjct 4231 CGTCAAGCTACAAAAGATGCAGGAGCTATTGCAGGTCTTAATGTTATTCGGATCATCAAT 4172 Query 451421 GAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaa 451480 ||||| || || |||||| | || ||||| |||| | ||| ||| |||||| Sbjct 4171 GAACCCACTGCTGCTGCTATTGCTTATGGTCTAG---------ACAAAAAAGATGAAAAA 4121 Query 451481 aaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAA 451540 | ||| | || | ||| ||||||| || || ||| |||||||| || || Sbjct 4120 ACTATACTTGTTTACGATCTTGGTGGTGGTACCTTCGATGTGTCTGTACTCGTCATAGAT 4061 Query 451541 GATGGGGTATTTGAAGTAAAGGCAAC 451566 | || || |||||||| | ||||| Sbjct 4060 AACGGCGTCTTTGAAGTCCATGCAAC 4035 >seq3225 Length=28280 Score = 147 bits (162), Expect = 9e-30 Identities = 167/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || |||||||| || || || ||||| |||||||| |||| Sbjct 379 ATGCAAATCTTTGTGAAGACTCTGACTGGCAAGACCATCACTCTGGATGTTGAGCCATCA 320 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||| ||| | ||| ||| ||||| || |||||||| |||||||||||||| Sbjct 319 GATACCATCGAAAACGTGAAAGCAAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAG 260 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | |||||| | || ||||| || |||||||| ||||| || | || || ||| Sbjct 259 CAGCGTCTCATTTTCGCTGGAAAACAGCTAGAAGATGGTAGAACGCTGTCCGACTACAAT 200 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 ||| | || || | || ||||| ||||| | | |||||||| Sbjct 199 ATTCAGAAAGAATCTACCCTTCATTTAGTTCTTCGCCTGAGAGG 156 Score = 102 bits (112), Expect = 3e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || |||||||| || || || || | |||||||| |||| Sbjct 151 ATGCAAATCTTCGTGAAGACTCTGACTGGCAAGACGATCACCTTGGATGTTGAGCCATCA 92 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||||| | ||| ||| ||||| || |||||||| |||||||||||||| Sbjct 91 GATACCATTGAAAACGTGAAAGCAAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAG 32 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACT 391198 || ||| | |||||| | || || || || Sbjct 31 CAGCGTCTCATTTTCGCCGGAAAGCAGCT 3 >seq4910 Length=23962 Score = 86.0 bits (94), Expect = 2e-11 Identities = 134/182 (74%), Gaps = 11/182 (6%) Strand=Plus/Plus Query 191011 TAAATTAAATTTAGTCAAATCAATATTACTtatat-ttggtattaaattaataaaagata 191069 ||||||||||| | | |||| ||| ||| |||| | || |||||||||||| |||| || Sbjct 13750 TAAATTAAATTAATTAAAATAAAT-TTATTTATTTATTTATATTAAATTAATTAAAG-TA 13807 Query 191070 atgata---aatcattaattttataataattcttataaataaattcaagatcagttaatt 191126 | ||| | ||| || ||| | ||||| ||||||||||| | | | |||||| Sbjct 13808 AATATATTTGTTTATTTATATTAAATTAATTAAAATAAATAAATT--AATTTATTTAATT 13865 Query 191127 ctaataaattaTTGTTATTTAGTTCAAACACTACAATA-TTATTTGGATT-AATATAATT 191184 || ||||||| | ||||||| || || | || || | |||||| ||| ||||||||| Sbjct 13866 ATATTAAATTAAT-TTATTTATTTTAATTAATATAAAATTTATTTATATTAAATATAATT 13924 Query 191185 AA 191186 || Sbjct 13925 AA 13926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975456755612288