Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20mitis_20[genbank_20GCA_5F000499745.1_202013-11-06] 10,336 sequences; 60,415,144 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq3727 369 3e-96 seq4039 304 1e-76 seq4291 154 1e-31 >seq3727 Length=8307 Score = 369 bits (408), Expect = 3e-96 Identities = 528/739 (71%), Gaps = 11/739 (1%) Strand=Plus/Plus Query 517977 TTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTT 518036 || ||| |||||||| ||||| | |||||| | |||||| | ||| || ||||||| Sbjct 1054 TTCTATTCTTTCTCTTAAAATCCTGAACACAGAAATCTACAAGTCTATTGTCGAAATCTT 1113 Query 518037 CACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAG 518096 | || || || | |||| ||||| |||||| | || | || | || ||||| | || Sbjct 1114 CTCCCCCTAAATGTGTATCTCCTGCTGTAGCTTTCACCTCAAAGATACCGTCTTCTATAG 1173 Query 518097 ACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCT- 518155 | | || || ||| || || || |||||||| ||||||||||||||||| ||| Sbjct 1174 TAAGCAAAGAAACGTCAAAAGTACCTCCCCCCATATCGAAAATAAGTACATTCATCTCTC 1233 Query 518156 -TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 518214 |||| | |||||||| | |||||| |||| ||| || || || |||||||| ||||| Sbjct 1234 CATGTCCT--TTTTTATCTAAACCATAAGCAATAGCTGCTGCTGTAGGTTCATTTATAAT 1291 Query 518215 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 518274 | || || || || || || || | ||||||||||| || ||||||||||||||||| Sbjct 1292 ACGTAATACGTTCAGCCCCGCTATAGTACCTGCATCTTTTGTTGCTTGTCTTTGTGAATC 1351 Query 518275 GTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCT 518334 || |||||||||||||| ||||| || || || | |||||||| || ||| |||| Sbjct 1352 ATTGAAATATGCAGGAACTGTAATTACAGCTTCTTTGACTTCTTTTCCTATAAAAGCTTC 1411 Query 518335 TGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG--GGAATATTGC 518392 || | | |||||| || |||| | ||||| ||| |||| |||||| | ||| || Sbjct 1412 AGCTATCTCTTTCATCTTCATTAATACCATTGCTGATATTTCTTCTGGGTGAAATGTTTT 1471 Query 518393 TTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACC---AACATTAATAACT 518449 || ||| |||||| |||||| | | ||||||| || | | || Sbjct 1472 TTTTGTTC--CTTGATAGTTTACTTCTATAAGTGGTTTACCTCCTGGTCCTGCTTTCACA 1529 Query 518450 TTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATT 518509 |||| ||||||| ||||||||||| || ||| | | || | ||| | ||| || ||| Sbjct 1530 GTAAAAGGCCAGTGTTTCATATCTGCCTGTACAGCTGGATCGTCAAACTTTCTTCCTATT 1589 Query 518510 AATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCA 518569 |||| |||||||||||| | ||||| ||| || |||| |||| | ||| |||||| Sbjct 1590 AATCTTTTTGCATCAAATACTGTATTTTCTGGGTTTCTTGCTACTTGGTTTTTTGCTGCA 1649 Query 518570 TCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCT 518629 ||||| | || ||||| || || |||| |||||| || || ||||| | || ||| Sbjct 1650 TCTCCTACAAGTCTCTCTGTATCGGTGAATGCAACATAAGAAGGTGTTGTTCTGTTTCCT 1709 Query 518630 TGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTT 518689 ||||| ||||| || || || || | | |||| |||||| || || ||| | | || Sbjct 1710 TGATCGTTCGCTATTATCTCTACACCATCGTTTTTCCATACCCCCACGCAAGAATACGTG 1769 Query 518690 GTTCCTAAATCAATACCAA 518708 ||||||| ||||||||||| Sbjct 1770 GTTCCTAGATCAATACCAA 1788 Score = 313 bits (346), Expect = 2e-79 Identities = 625/920 (68%), Gaps = 7/920 (1%) Strand=Plus/Plus Query 517093 ATAATTTTCTAATTCATTTTTAGAATCAACA-GCAGCTTTTTTCTTGTTATCTGCTTCTT 517151 ||||||||| | | |||| |||| || ||| | | || ||| | | |||| | ||| Sbjct 96 ATAATTTTCAAGTGCATTCTTAGCTTCTACACGTTGTTTATTTGCT-TCATCTTCGGCTT 154 Query 517152 CAAATTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGAT 517211 | ||| | ||||| | |||||| || || | | | | | | ||| || || Sbjct 155 TATATTTCTCTGCTTCGGCTACCATTCTATCTATCTCACCCTGACTTAGTCTACCCTTAT 214 Query 517212 TATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAA 517271 ||| || || || || | || || || ||| ||| || | || || ||||| | Sbjct 215 CATTGGTGATGGTGATCTGGTTTGACTTTCCTGTATTTTTTTCTGTTGCTGTAACATTCA 274 Query 517272 GAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAG 517331 ||| ||||| ||||| | ||| || || ||||| ||||| || || ||||| | |||| Sbjct 275 TAATGCCATTTGCATCTATATCGAAAGTAACTTCTATTTGGGGTACTCCTCTTGGTGCAG 334 Query 517332 GTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTT 517391 | || || || || | || ||| | || | |||||||||||| || | | || || Sbjct 335 GAGGAATACCATCAAGATGAAACTTGCCTAATAAATTATTATCTTTTGTCATTGCTCTTT 394 Query 517392 CACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTC 517451 | |||||||||| ||| ||| || | | |||||| |||| ||| ||||| |||| | Sbjct 395 CTCCCTCGAAAACTTGTATAAGTACACCCGGTTGATTGTCTGCATATGTTGTGAATATTT 454 Query 517452 TGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTG 517511 |||||||| |||||||||||| ||||| || || | || ||||| | || || | Sbjct 455 GTGATTTTTTTGTAGGAATTGTTGTATTTCTTTCTATTAATTTCGTCATTACTCCTCCAG 514 Query 517512 CTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTT 517571 ||||||||| ||||||||||||||||| ||||||| | | || || ||| | || | Sbjct 515 CTGTTTCTAGACCAAGAGAAAGAGGAGCAACATCAAGCAACAAAAGATCTTGTACTTGTG 574 Query 517572 CATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCAT 517631 | | || || | |||||||| || | ||| |||||||||||||||||||||| Sbjct 575 AACTATTTACTCCTTTTAATATAGCTGCCTGTACAGCTGCACCATATGCAACAGCTTCAT 634 Query 517632 CAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTA 517691 ||||||| | || | ||| ||| ||||| ||||| | | | ||||||| || Sbjct 635 CAGGATTTATAGAACGACAAGGTTCTTTTCCATTAAAAAATTCTTGTATAAGTTGTTGTA 694 Query 517692 CCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCA 517751 ||| || || | | ||||||||| || ||||||| |||||| || | ||||| | Sbjct 695 TCTTCGGTATTCTTGTTGATCCTCCCACCAATACAACTTCATGTACACTTCGCTTATCTA 754 Query 517752 GTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTGAAC 517811 ||| || ||||| || || ||| |||| ||| || | || || Sbjct 755 TACCACTATCTTTTAGTACTTTCTCTACAGGTACAAGTGAGTTTCTGAAGTAATCCATAC 814 Query 517812 AAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAAG 517871 |||||||||||||| |||| | || ||||| ||| |||||||| || || || | | Sbjct 815 AAAGTTCTTCGAATCTAGCACGAGAAAGAGAAACAGAGTAATCAATACCCTCAAAAAGTG 874 Query 517872 AATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATG 517931 |||| | ||| || |||| ||| || | ||||| | | ||| || | ||||||| Sbjct 875 AATCTATTTCTATAGTAGCTTGTGTACTACTAGATAAAGTTCTTTTCGCTCTTTCACATT 934 Query 517932 CTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG-ATTCAAATC---TGTTTTATATTTT 517987 ||| |||| ||||| || || | ||||| ||| | || ||| || ||| ||| Sbjct 935 GTGTTCTTAATCTTCTCAATGC-TCTGCTGTTTGTACTCGGATCCTTACTTCTATTCTTT 993 Query 517988 CTCTTGAAATCTTCAACACA 518007 ||||| ||||| | |||||| Sbjct 994 CTCTTAAAATCCTGAACACA 1013 >seq4039 Length=7894 Score = 304 bits (336), Expect = 1e-76 Identities = 623/920 (68%), Gaps = 7/920 (1%) Strand=Plus/Minus Query 517093 ATAATTTTCTAATTCATTTTTAGAATCAACA-GCAGCTTTTTTCTTGTTATCTGCTTCTT 517151 ||||||||| | | |||| |||| || ||| | | || ||| | | |||| | ||| Sbjct 919 ATAATTTTCAAGTGCATTCTTAGCTTCTACACGTTGTTTATTTGCT-TCATCTTCGGCTT 861 Query 517152 CAAATTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGAT 517211 | ||| | || || || |||||| || || | | | | | | ||| || || Sbjct 860 TATATTTCTCCGCCTCAGCAACCATTCTATCTATCTCACCCTGACTTAGTCTACCCTTAT 801 Query 517212 TATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAA 517271 ||| || || || || | || || || ||| ||| || | || || ||||| | Sbjct 800 CATTGGTGATGGTGATCTGGTTTGACTTTCCTGTATTTTTTTCTGTTGCTGTAACATTCA 741 Query 517272 GAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAG 517331 ||| ||||| ||||| | ||| || || ||||| ||||| || || ||||| | |||| Sbjct 740 TAATGCCATTTGCATCTATATCGAAAGTAACTTCTATTTGGGGTACTCCTCTTGGTGCAG 681 Query 517332 GTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTT 517391 | || || || || | || ||| | || | |||||||||||| || | | || || Sbjct 680 GAGGAATACCATCAAGATGAAACTTGCCTAATAAATTATTATCTTTTGTCATTGCTCTTT 621 Query 517392 CACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTC 517451 | |||||||||| ||| ||| || | | |||||| |||| ||| ||||| |||| | Sbjct 620 CTCCCTCGAAAACTTGTATAAGTACACCCGGTTGATTGTCTGCATATGTTGTGAATATTT 561 Query 517452 TGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTG 517511 |||||||| |||||||||||| ||||| || || | || ||||| | ||| |||| Sbjct 560 GTGATTTTTTTGTAGGAATTGTTGTATTTCTTTCTATTAATTTCGTCATCACACCTCCTG 501 Query 517512 CTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTT 517571 |||| |||| ||||||||||||||||| ||||||| | | || || ||| | || | Sbjct 500 CTGTCTCTAGACCAAGAGAAAGAGGAGCAACATCAAGCAACAAAAGATCTTGTACTTGTG 441 Query 517572 CATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCAT 517631 | | || || | |||||||| || | ||| ||||||||||||||||| |||| Sbjct 440 AACTATTTACTCCTTTTAATATAGCTGCCTGTACAGCTGCACCATATGCAACAGCCTCAT 381 Query 517632 CAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTA 517691 | || || | || | | ||| ||| || || ||||| | | | ||||||| || Sbjct 380 CTGGGTTTATAGAACGACATGGTTCTTTTCCGTTAAAAAATTCTTGTATAAGTTGTTGTA 321 Query 517692 CCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCA 517751 ||| || || | | ||||||||| || ||||||| |||||| || | ||||| | Sbjct 320 TCTTCGGTATTCTTGTTGATCCTCCCACCAATACAACTTCATGTACACTTCGCTTATCTA 261 Query 517752 GTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTGAAC 517811 |||| || ||||| || || ||| |||| ||| || | || || Sbjct 260 TACCACTATCCTTCAATACTTTCTCTACAGGTACAAGTGAATTTCTGAAGTAATCCATAC 201 Query 517812 AAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAAG 517871 |||||||||||||| |||| | || ||||| ||| |||||||| || || || | | Sbjct 200 AAAGTTCTTCGAATCTAGCACGAGAAAGAGAAACAGAGTAATCAATACCCTCAAAAAGTG 141 Query 517872 AATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATG 517931 |||| | ||| || |||| ||| || | |||| | | ||| || | |||||| Sbjct 140 AATCTATTTCTATAGTAGCTTGTGTACTACTCGATAAAGTTCTTTTCGCTCTTTCACACT 81 Query 517932 CTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG-ATTCAAATC---TGTTTTATATTTT 517987 ||| |||||||||| || || | ||||| ||| | || ||| || ||| ||| Sbjct 80 GTGTTCTTAGTCTTCTCAATGC-TCTGCTGTTTGTACTCGGATCCTTACTTCTATTCTTT 22 Query 517988 CTCTTGAAATCTTCAACACA 518007 ||||| ||||| | |||||| Sbjct 21 CTCTTAAAATCCTGAACACA 2 >seq4291 Length=7478 Score = 154 bits (170), Expect = 1e-31 Identities = 194/265 (73%), Gaps = 6/265 (2%) Strand=Plus/Plus Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 518167 ||||| ||| |||||||| | ||| ||| ||||| | | |||| | ||| || Sbjct 4080 ACATCGAAGGTACCACCACCAAGATCGTAAACAAGTATAGTTTTTTCAT---CTT---TT 4133 Query 518168 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 518227 || || |||||||| |||| |||||||||||| |||||||| || || | | ||||||| Sbjct 4134 TTGTCTAGACCATAAGCAATAGCAGCAGCAGTGGGTTCATTGATGATCCGAATAACATTA 4193 Query 518228 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 518287 ||||| ||||| |||||||||||| || ||||| | || | ||| ||||| |||||| Sbjct 4194 AGACCTGCAATAGCTCCTGCATCTTTTGTAGCTTGACGCTGAGCATCATTAAAGTATGCA 4253 Query 518288 GGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTC 518347 || ||||||| ||| |||| |||||||| | || | ||| ||| || |||| Sbjct 4254 GGTACAGTAACAACAGCATTCTTTACTTCTCTCCCTAGATAGTTTTCTGCTACTTCTTTC 4313 Query 518348 ATTTTACTTAAAATCATTGATGAAA 518372 || || | ||| | ||| | ||||| Sbjct 4314 ATCTTTCCTAATACCATAGCTGAAA 4338 Score = 132 bits (146), Expect = 4e-25 Identities = 248/363 (68%), Gaps = 11/363 (3%) Strand=Plus/Plus Query 517423 TTGATTATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTC 517481 ||| |||||||| ||||| | || | | || |||| || ||||| |||||| Sbjct 2121 TTGGTTATCTGAGTAAGTGGAGAA-AGTTTGTGTTTTCTTGGTGGGAATGACGGTGTTTT 2179 Query 517482 TATCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGA 517541 | | || | || | ||||| |||||| || ||||| | ||| || | |||||| || | Sbjct 2180 TGTTGATGACCTTCGCCATAACACCACCAGCAGTTTCAATACCGAGTGTAAGAGGCGTAA 2239 Query 517542 CATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTT 517601 |||||| | || |||| || | ||| | | | |||||| | || | Sbjct 2240 CATCAAGCAATACCATATCCTGTGTTCCTTCTCCGGAT---------AGAATACCAGCCT 2290 Query 517602 GAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTAC 517661 ||| ||| ||||||||||||||||||||||| ||||| | | ||| ||| ||| | Sbjct 2291 GAACAGCTGCACCATATGCAACAGCTTCATCGGGATTGATGCCTCTGTTTGGTTCTTTTC 2350 Query 517662 CATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTA 517721 | |||||||| | || ||| ||| || ||| |||||||||| ||| || ||||| | Sbjct 2351 CGTTGAAAAATTCCTTAATAAGCTGTTGTATCTTTGGAATACGAGTTGAACCACCAACAA 2410 Query 517722 ATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGG 517781 ||||| |||| | ||| ||||| | ||| | || ||| |||||||| || || | Sbjct 2411 GAACAATCTCATCTATCTGAGATTTCTTCAGATCTGCATCTTCTAAAACTTGTTTCACAG 2470 Query 517782 GTT 517784 ||| Sbjct 2471 GTT 2473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780309493633216