Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20mitis_20[genbank_20GCA_5F000499745.1_202013-11-06] 10,336 sequences; 60,415,144 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq3981 118 1e-21 seq3103 116 4e-21 >seq3981 Length=8532 Score = 118 bits (130), Expect = 1e-21 Identities = 163/227 (72%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 46982 AGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCAGTCTTTAA 47041 ||| || ||||||| || | || | || || | ||||||||||| || |||||||| Sbjct 507 AGTGAATTTAATTGCATCAGCAGCAGCTTGCGTCCTAAAATAATACATGCCTGTCTTTAA 566 Query 47042 ACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAAT 47101 ||| || |||||||||||||||||| | | || ||||| || | ||| || Sbjct 567 GCCTCCACGCCATCCATAGAAATGCATCGTTGATAGTTTAGCGTATGTGGGTGTATTCAT 626 Query 47102 ATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAA 47161 || ||||||||||| ||||||||||| ||| | | | ||||||| | | ||||| Sbjct 627 ATATATATTAAGAGACTGACTCTGATCTATATAAGGAGCTCTATCTATAGATAGATCTAT 686 Query 47162 AATAACCCTTTGTGGTATCTCCCATACTGTTTTATA-AATTTGTTTA 47207 ||| ||||| |||||||||||| || ||||| || || |||| Sbjct 687 TATATGTTTTTGTTTTATCTCCCATACAGTCTTATATAAATTTTTTA 733 >seq3103 Length=10288 Score = 116 bits (128), Expect = 4e-21 Identities = 213/311 (68%), Gaps = 2/311 (1%) Strand=Plus/Plus Query 47882 TATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGC 47941 |||||||||||| |||||||||||||| || | | ||| |||||||||||||||||| Sbjct 659 TATAGATGCTAGGTTACATACAGCTACTTCTTCTTTATTTGTATATTGTATTATTTCACA 718 Query 47942 ACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGC 48001 ||||| ||||| || ||| || |||| ||| |||||| | | || ||||| Sbjct 719 ACATAAATTACTCGATCGTATACACCCTAAATGTTGTTGATTACTCTTTCTATTGCATGC 778 Query 48002 GTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCA 48061 || || || | |||| | |||||||| || |||||||| | || | ||| ||| Sbjct 779 ATCTTTATATAACATATATGGTGTTCCTGTCTCTATCTGTGCTTGTAATATACTAAACCA 838 Query 48062 AACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATATAA 48121 | | || ||||| ||| || | || | |||||||| ||||||| Sbjct 839 TAGTTTTTGTGCTTTTATCTTTCTTCTCCCTCGACCCTCTCGCTCGTATTTTTTATATAA 898 Query 48122 CTTCTCAAATTCATCCCCATACACATT-ATCTAACCCAGGACATTCATTAGGACACATCA 48180 || | ||| || || || | ||||| | ||| ||||| || || | |||||||||| Sbjct 899 ATTATTAAACTCTTCACCCCA-ACATTCAGTTAAACCAGGGCACTCGCTTGGACACATCA 957 Query 48181 ATGACCAATCC 48191 | | ||| ||| Sbjct 958 ACGTCCAGTCC 968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562036175543040