Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20mitis_20[genbank_20GCA_5F000499745.1_202013-11-06] 10,336 sequences; 60,415,144 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq3727 298 7e-76 seq4039 203 4e-47 seq3225 176 6e-39 seq4291 145 1e-29 >seq3727 Length=8307 Score = 298 bits (330), Expect = 7e-76 Identities = 487/697 (70%), Gaps = 6/697 (1%) Strand=Plus/Minus Query 195294 CTCAAGCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATG 195353 ||| ||| ||||||| ||| ||||||| || || || || || || |||||| |||| | Sbjct 1797 CTCCAGCAGTTGGTATTGATCTAGGAACCACGTATTCTTGCGTGGGGGTATGGAAAAACG 1738 Query 195354 ATCGTGTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCT 195413 || |||||||||| || |||| || ||||||||| | ||||| || || || ||||| | Sbjct 1737 ATGGTGTAGAGATAATAGCGAACGATCAAGGAAACAGAACAACACCTTCTTATGTTGCAT 1678 Query 195414 TTACAGATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTA 195473 | || |||| || | || || |||||||| |||||||| || ||| | ||||| Sbjct 1677 TCACCGATACAGAGAGACTTGTAGGAGATGCAGCAAAAAACCAAGTAGCAAGAAACCCAG 1618 Query 195474 TCAATACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCC 195533 ||||| || ||||| || || | | || || | |||||| ||| || | Sbjct 1617 AAAATACAGTATTTGATGCAAAAAGATTAATAGGAAGAAAGTTTGACGATCCAGCTGTAC 1558 Query 195534 AAGACGATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGA 195593 | | ||||| || ||||| ||| | || | || | | ||| || | | Sbjct 1557 AGGCAGATATGAAACACTGGCCTTTTACTGTGAAAGCAGGACCAGGAGGTAAACCACTTA 1498 Query 195594 TTAATGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGG 195653 | | || | | ||| || || ||| |||| || |||||||| || | |||| Sbjct 1497 TAGAAGTAAACTATCAAGGAACAAAAAAAACATTTCACCCAGAAGAAATATCAGCAATGG 1438 Query 195654 TGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAG 195713 | || || |||||||| |||| || ||| |||| || || ||| || ||||| || | Sbjct 1437 TATTAATGAAGATGAAAGAGATAGCTGAAGCTTTTATAGGAAAAGAAGTCAAAGAAGCTG 1378 Query 195714 TTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTG 195773 | | || || ||||| || |||| |||||||||| |||| || ||||| || || | | Sbjct 1377 TAATTACAGTTCCTGCATATTTCAATGATTCACAAAGACAAGCAACAAAAGATGCAGGTA 1318 Query 195774 CTATTGCGGGTCTAAACTGTCTTA-GAATTATCAATGAACCAACAGCGGCTGCAATTGCT 195832 |||| ||||| || ||| || ||| | ||||| |||||||| ||||| || || |||||| Sbjct 1317 CTATAGCGGGGCTGAAC-GTATTACGTATTATAAATGAACCTACAGCAGCAGCTATTGCT 1259 Query 195833 TATGGTCTGGACAAGAACAAGGAC--GAAGATAAAAATGTATTGATCTTTGATCTCGGTG 195890 |||||| | || || || ||||| | ||| | |||||| | || || ||| | || | Sbjct 1258 TATGGTTTAGATAAAAA--AGGACATGGAGAGATGAATGTACTTATTTTCGATATGGGGG 1201 Query 195891 GTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTA 195950 | ||||| ||||| || || | || | ||| |||| ||||| || || || || |||| Sbjct 1200 GAGGTACTTTTGACGTTTCTTTGCTTACTATAGAAGACGGTATCTTTGAGGTGAAAGCTA 1141 Query 195951 CTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 | || || ||||| ||| |||| || ||||||||||| Sbjct 1140 CAGCAGGAGATACACATTTAGGGGGAGAAGATTTCGA 1104 Score = 196 bits (216), Expect = 6e-45 Identities = 349/501 (70%), Gaps = 14/501 (3%) Strand=Plus/Minus Query 196262 ATGGATAAGTCTAAG-GTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAA 196320 || |||||| | ||| || ||||| |||| | |||||||||||||| | || ||||| Sbjct 755 ATAGATAAG-CGAAGTGTACATGAAGTTGTATTGGTGGGAGGATCAACAAGAATACCGAA 697 Query 196321 GATTCAACAGATGCTTTCTAGC-TTCTTCAATAATAAAGATTTAAACAAAACGATC---- 196375 ||| ||||| | | | || || || ||| ||||| | | || || Sbjct 696 GATACAACAACTTATA-CAAGAATTTTTTAATGGAAAAGA----ACCTTGTCGTTCTATA 642 Query 196376 AACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGTT 196435 || || |||||||| ||||| |||||||| || || ||||| ||||| | ||| || Sbjct 641 AATCCTGATGAAGCTGTTGCATATGGTGCAGCTGTACAGGCAGCTATATTAAAAGGAGTA 582 Query 196436 GACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCTT 196495 | | | | || ||||||||| || | ||||||||||| || | || || ||||| Sbjct 581 AATAGTTCACAAGTACAAGATCTTTTGTTGCTTGATGTTGCTCCTCTTTCTCTTGGTCTA 522 Query 196496 GAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTAAG 196555 |||||||| || || || ||||| ||| | || || || || ||||| ||||| || || Sbjct 521 GAAACAGCTGGAGGAGTAATGACGAAATTAATAGAAAGAAATACAACAATTCCTACAAAA 462 Query 196556 AAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTATAT 196615 || |||| | || |||| ||| | || |||||||| ||||| | ||| ||||| | Sbjct 461 AAATCACAAATATTCACAACATATGCAGACAATCAACCGGGTGTACTTATACAAGTTTTC 402 Query 196616 GAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGG-AACTTTCGATTTGACGGG 196674 || |||||| | | |||| ||||| || || | || || |||| |||| || Sbjct 401 GAGGGAGAAAGAGCAATGACAAAAGATAATAATTTATTAGGCAAGTTTCATCTTGA-TGG 343 Query 196675 GATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCAAA 196734 ||||| ||||||| ||||| || || || || | ||| ||||||||||| ||||| Sbjct 342 TATTCCTCCTGCACCAAGAGGAGTACCCCAAATAGAAGTTACTTTCGATATAGATGCAAA 283 Query 196735 TGGAATTCTAAACGTCACAGC 196755 ||| ||| | || || ||||| Sbjct 282 TGGCATTATGAATGTTACAGC 262 >seq4039 Length=7894 Score = 203 bits (224), Expect = 4e-47 Identities = 454/673 (67%), Gaps = 14/673 (2%) Strand=Plus/Plus Query 196262 ATGGATAAGTCTAAG-GTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAA 196320 || |||||| | ||| || ||||| |||| | |||||||||||||| | || ||||| Sbjct 260 ATAGATAAG-CGAAGTGTACATGAAGTTGTATTGGTGGGAGGATCAACAAGAATACCGAA 318 Query 196321 GATTCAACAGATGCTTTCTAGC-TTCTTCAATAATAAAGATTTAAACAAAACGATC---- 196375 ||| ||||| | | | || || || || ||||| | || || || Sbjct 319 GATACAACAACTTATA-CAAGAATTTTTTAACGGAAAAGA----ACCATGTCGTTCTATA 373 Query 196376 AACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGTT 196435 ||||| ||||| || ||||| |||||||| || || ||||| ||||| | ||| || Sbjct 374 AACCCAGATGAGGCTGTTGCATATGGTGCAGCTGTACAGGCAGCTATATTAAAAGGAGTA 433 Query 196436 GACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCTT 196495 | | | | || ||||||||| || | ||||||||||| || | || || ||||| Sbjct 434 AATAGTTCACAAGTACAAGATCTTTTGTTGCTTGATGTTGCTCCTCTTTCTCTTGGTCTA 493 Query 196496 GAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTAAG 196555 || ||||| || ||||| ||||| ||| | || || || || ||||| ||||| || || Sbjct 494 GAGACAGCAGGAGGTGTGATGACGAAATTAATAGAAAGAAATACAACAATTCCTACAAAA 553 Query 196556 AAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTATAT 196615 || |||| | || |||| ||| | || |||||||| ||||| | ||| ||||| | Sbjct 554 AAATCACAAATATTCACAACATATGCAGACAATCAACCGGGTGTACTTATACAAGTTTTC 613 Query 196616 GAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGG-AACTTTCGATTTGACGGG 196674 || |||||| | | |||| ||||| || || | || || |||| |||| || Sbjct 614 GAGGGAGAAAGAGCAATGACAAAAGATAATAATTTATTAGGCAAGTTTCATCTTGA-TGG 672 Query 196675 GATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCAAA 196734 ||||| ||||||| ||||| || || || || | ||| ||||||||||| ||||| Sbjct 673 TATTCCTCCTGCACCAAGAGGAGTACCCCAAATAGAAGTTACTTTCGATATAGATGCAAA 732 Query 196735 TGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTGAT 196794 ||| ||| | || || ||||| || || | | || || || | |||| || Sbjct 733 TGGCATTATGAATGTTACAGCAACAGAAAAAAATACAGGAAAGTCAAACCAGATCACCAT 792 Query 196795 TACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATGCGGA 196854 |||||||| ||||| | || | ||| || || || | |||||| || ||||| Sbjct 793 CACCAATGATAAGGGTAGACTAAGTCAGGGTGAGATAGATAGAATGGTTGCTGAGGCGGA 852 Query 196855 AAAGTACAGGGAAGAAGACGAGGTATATGAGAAACAGATGAAAGCTATAAATGATCTAGA 196914 || || | | ||||| || | | || | ||| | |||||| |||| || || Sbjct 853 GAAATATAAAGCCGAAGATGAAGCAAATAAACAACGTGTAGAAGCTAAGAATGCACTTGA 912 Query 196915 AAATTCTACTTAT 196927 ||||| | |||| Sbjct 913 AAATTATTGTTAT 925 >seq3225 Length=28280 Score = 176 bits (194), Expect = 6e-39 Identities = 180/234 (77%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||||||||||||||| || || ||||| || || ||||| || || |||||| | ||| Sbjct 379 ATGCAAATCTTTGTGAAGACTCTGACTGGCAAGACCATCACTCTGGATGTTGAGCCATCA 320 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || ||||| ||| | ||||| |||||||| || |||||||| ||||| || |||||| Sbjct 319 GATACCATCGAAAACGTGAAAGCAAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAG 260 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || ||||| ||||| |||||||| |||||||| | || || | || ||||| Sbjct 259 CAGCGTCTCATTTTCGCTGGAAAACAGCTAGAAGATGGTAGAACGCTGTCCGACTACAAT 200 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG--TGCAA 172093 |||| || || ||||| || || | ||||| | || | ||||| ||||| Sbjct 199 ATTCAGAAAGAATCTACCCTTCATTTAGTTCTTCGCCTGAGAGGTGGCATGCAA 146 Score = 129 bits (142), Expect = 8e-25 Identities = 118/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||||||||| ||||| || || ||||| || || |||||| | || |||||| | ||| Sbjct 151 ATGCAAATCTTCGTGAAGACTCTGACTGGCAAGACGATCACCTTGGATGTTGAGCCATCA 92 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || || || ||| | ||||| |||||||| || |||||||| ||||| || |||||| Sbjct 91 GATACCATTGAAAACGTGAAAGCAAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAG 32 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCT 172010 || || || ||||| || || || ||||| Sbjct 31 CAGCGTCTCATTTTCGCCGGAAAGCAGCT 3 >seq4291 Length=7478 Score = 145 bits (160), Expect = 1e-29 Identities = 208/291 (71%), Gaps = 8/291 (3%) Strand=Plus/Minus Query 195620 AAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCG 195679 ||| || |||||||||| || |||| ||||||| || |||||||| || || Sbjct 4360 AAAGAACTTGCTCCCGAGGAGGTTTCAGCTATGGTATTAGGAAAGATGAAAGAAGTAGCA 4301 Query 195680 GAAT-CTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAG 195738 ||| || || ||| | | || || |||| ||||| ||||||||||| ||||| | Sbjct 4300 GAAAACTATCTAGGGAGAGAA-GTAAAGAATGCTGTTGTTACTGTACCTGCATACTTTAA 4242 Query 195739 TGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAG 195798 |||| | || || || || ||||| || || | |||||||| ||||| || | || | Sbjct 4241 TGATGCTCAGCGTCAAGCTACAAAAGATGCAGGAGCTATTGCAGGTCTTAATGTTATTCG 4182 Query 195799 AATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGA 195858 || ||||||||||| || || ||||| |||||||||||||| ||||| | | || Sbjct 4181 GATCATCAATGAACCCACTGCTGCTGCTATTGCTTATGGTCTAGACAAAA------AAGA 4128 Query 195859 AGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTC 195909 || |||| | || | | | ||||| ||||||||||| || ||||| || Sbjct 4127 TGAAAAAACTATACTTGTTTACGATCTTGGTGGTGGTACCTTCGATGTGTC 4077 Score = 123 bits (136), Expect = 3e-23 Identities = 155/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 195302 ATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGG--TGTATGGCAAAATGATCGTG 195359 |||||||| || | || ||||| |||||||||||||| ||||| | | | | ||||| Sbjct 4912 ATTGGTATTGACCTGGGTACTACATACTCATGTGTTGGGGTGTATAG--ACAGGGTCGTG 4855 Query 195360 TAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAG 195419 |||| || || || ||||| || || || |||| ||||| || ||| | ||| | | Sbjct 4854 TAGATATAATTCCTAATGATCAGGGGAATCGTATTACTCCCAGTTATGTTTCTTTTGCTG 4795 Query 195420 ATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATA 195479 || ||||||||| |||| || || ||||||||| | |||| | || || | |||| Sbjct 4794 ATGATGAACGTCGTATTGGTGAAGCAGCAAAAAATGAAGCAGCAAACAATCCAACAAATA 4735 Query 195480 CTGTCTTTGACGCGAAGCGTCTTATTGGTCG 195510 | | ||||| | ||| |||||||||||||| Sbjct 4734 CAATTTTTGATGTGAAACGTCTTATTGGTCG 4704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657777404177920