Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20mitis_20[genbank_20GCA_5F000499745.1_202013-11-06] 10,336 sequences; 60,415,144 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq4538 87.8 3e-12 >seq4538 Length=22927 Score = 87.8 bits (96), Expect = 3e-12 Identities = 119/161 (74%), Gaps = 4/161 (2%) Strand=Plus/Plus Query 38831 TTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAA 38890 ||| ||||| ||| ||| |||||| || || ||||||||||||| ||| || ||||| Sbjct 8274 TTTCTGGTAATCACCAACACGTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGAAATTAA 8333 Query 38891 ATTCATAAAATCAAATGGATTTTTGGTATTATAATA-TTTTTCTCCTATCAATACATAT- 38948 || |||||| ||||| ||||| | ||| |||| ||||||||| ||| ||| | Sbjct 8334 ATCCATAAAGTCAAAAGGATTACGCGAATT-GAATATTTTTTCTCCCCCCAA-ACAAGTC 8391 Query 38949 AATAATCTATCGGCCACAAATTCAACATATTGTAACATTAA 38989 | || | ||| || ||||| |||| ||| || ||||||| Sbjct 8392 AGCAAACGATCAGCAACAAACTCAATATACTGCGACATTAA 8432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905019056428800