Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20mitis_20[genbank_20GCA_5F000499745.1_202013-11-06] 10,336 sequences; 60,415,144 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq3225 86.0 5e-12 >seq3225 Length=28280 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| || ||| | || ||||| ||||| || | || ||||| Sbjct 379 ATGCAAATCTTTGTGAAGACTCTGACTGGCAAGACCATCACTCTGGATGTTGAGCCATCA 320 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | || ||| |||||| ||||| ||||| | || ||||| Sbjct 319 GATACCATCGAAAACGTGAAAGCAAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAG 260 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || |||| || || |||||||| || |||| ||||| || | || ||||| Sbjct 259 CAGCGTCTCATTTTCGCTGGAAAACAGCTAGAAGATGGTAGAACGCTGTCCGACTACAAT 200 Query 110453 ATTCAAAAAGAATCTAC 110469 ||||| ||||||||||| Sbjct 199 ATTCAGAAAGAATCTAC 183 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || |||||||| || | || ||||| ||||| || | || ||||| Sbjct 608 AATGCAGATCTTTGTCAAGACGCTCACGGGCAAGACCATCACTCTGGATGTTGAGCCATC 549 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 |||||| | | | || ||| |||||| ||||| || || | || || || Sbjct 548 AGATACTATAGAGAACGTGAAAGCAAAGATTCAGGACAAGGAGGGTATCCCTCCTGACCA 489 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || | || |||| || || || |||||||| |||| ||| ||| || | || ||||| Sbjct 488 GCAGCGTCTCATTTTCGCCGGCAAGCAGCTGGAAGATGGCAGGACACTGTCCGACTACAA 429 Query 110452 CATTCAAAAAGAATCTAC 110469 |||||| ||||||||||| Sbjct 428 CATTCAGAAAGAATCTAC 411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412789594343648