Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20mitis_20[genbank_20GCA_5F000499745.1_202013-11-06] 10,336 sequences; 60,415,144 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq3727 374 6e-98 seq4039 304 1e-76 seq4291 159 3e-33 >seq3727 Length=8307 Score = 374 bits (414), Expect = 6e-98 Identities = 529/739 (72%), Gaps = 11/739 (1%) Strand=Plus/Plus Query 282144 TTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTT 282203 || ||| |||||||| ||||| | |||||| | |||||| | ||| || ||||||| Sbjct 1054 TTCTATTCTTTCTCTTAAAATCCTGAACACAGAAATCTACAAGTCTATTGTCGAAATCTT 1113 Query 282204 CACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAG 282263 | || || || | |||| ||||| |||||| | || | || | || ||||| | || Sbjct 1114 CTCCCCCTAAATGTGTATCTCCTGCTGTAGCTTTCACCTCAAAGATACCGTCTTCTATAG 1173 Query 282264 ACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCT- 282322 | | || ||| ||| || || || |||||||| ||||||||||||||||| ||| Sbjct 1174 TAAGCAAAGAAACGTCAAAAGTACCTCCCCCCATATCGAAAATAAGTACATTCATCTCTC 1233 Query 282323 -TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 282381 |||| | |||||||| | |||||| |||| ||| || || || |||||||| ||||| Sbjct 1234 CATGTCCT--TTTTTATCTAAACCATAAGCAATAGCTGCTGCTGTAGGTTCATTTATAAT 1291 Query 282382 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 282441 | || || || || || || || | ||||||||||| || ||||||||||||||||| Sbjct 1292 ACGTAATACGTTCAGCCCCGCTATAGTACCTGCATCTTTTGTTGCTTGTCTTTGTGAATC 1351 Query 282442 GTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCT 282501 || |||||||||||||| ||||| || || ||| | ||||||||||| ||| |||| Sbjct 1352 ATTGAAATATGCAGGAACTGTAATTACAGCTTCTTTGACTTCTTTTCCTATAAAAGCTTC 1411 Query 282502 TGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG--AGAATATTGC 282559 ||| | | |||||| || |||| | ||||| ||| |||| |||||| ||| || Sbjct 1412 AGCTATCTCTTTCATCTTCATTAATACCATTGCTGATATTTCTTCTGGGTGAAATGTTTT 1471 Query 282560 TTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACC---AACATTAATAACT 282616 || ||| |||||| |||||| | | ||||||| || | | || Sbjct 1472 TTTTGTTC--CTTGATAGTTTACTTCTATAAGTGGTTTACCTCCTGGTCCTGCTTTCACA 1529 Query 282617 TTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATT 282676 |||| ||||| | ||||||||||| || ||| | | || | ||| | ||| || ||| Sbjct 1530 GTAAAAGGCCAGTGTTTCATATCTGCCTGTACAGCTGGATCGTCAAACTTTCTTCCTATT 1589 Query 282677 AATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCA 282736 |||| |||||||||||| | ||||| ||| || ||| |||| | ||| |||||| Sbjct 1590 AATCTTTTTGCATCAAATACTGTATTTTCTGGGTTTCTTGCTACTTGGTTTTTTGCTGCA 1649 Query 282737 TCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCT 282796 ||||| | || ||||| || || |||| |||||| || || ||||| | || ||| Sbjct 1650 TCTCCTACAAGTCTCTCTGTATCGGTGAATGCAACATAAGAAGGTGTTGTTCTGTTTCCT 1709 Query 282797 TGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTT 282856 ||||| ||||| || || || || | | |||| |||||| || || ||| | | || Sbjct 1710 TGATCGTTCGCTATTATCTCTACACCATCGTTTTTCCATACCCCCACGCAAGAATACGTG 1769 Query 282857 GTTCCTAAATCAATACCAA 282875 ||||||| ||||||||||| Sbjct 1770 GTTCCTAGATCAATACCAA 1788 Score = 318 bits (352), Expect = 4e-81 Identities = 626/920 (68%), Gaps = 7/920 (1%) Strand=Plus/Plus Query 281260 ATAATTTTCTAATTCATTTTTAGAATCAACA-GCAGCTTTTTTCTTGTTATCTGCTTCTT 281318 ||||||||| | | |||| |||| || ||| | | || ||| | | |||| | ||| Sbjct 96 ATAATTTTCAAGTGCATTCTTAGCTTCTACACGTTGTTTATTTGCT-TCATCTTCGGCTT 154 Query 281319 CAAATTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGAT 281378 | ||| | ||||| | |||||| || || | | | | | | ||| || || Sbjct 155 TATATTTCTCTGCTTCGGCTACCATTCTATCTATCTCACCCTGACTTAGTCTACCCTTAT 214 Query 281379 TATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAA 281438 ||| || || || || | || || || ||| ||| || | || || ||||| | Sbjct 215 CATTGGTGATGGTGATCTGGTTTGACTTTCCTGTATTTTTTTCTGTTGCTGTAACATTCA 274 Query 281439 GAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAG 281498 ||| ||||| ||||| | ||| || || ||||| ||||| || || ||||| | |||| Sbjct 275 TAATGCCATTTGCATCTATATCGAAAGTAACTTCTATTTGGGGTACTCCTCTTGGTGCAG 334 Query 281499 GTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTT 281558 | || || || || | || ||| | || | |||||||||||| || | | || || Sbjct 335 GAGGAATACCATCAAGATGAAACTTGCCTAATAAATTATTATCTTTTGTCATTGCTCTTT 394 Query 281559 CACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTC 281618 | |||||||||| ||| ||| || | | |||||| |||| ||| ||||| |||| | Sbjct 395 CTCCCTCGAAAACTTGTATAAGTACACCCGGTTGATTGTCTGCATATGTTGTGAATATTT 454 Query 281619 TGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAG 281678 |||||||| |||||||||||| ||||| || || | || ||||| | || |||| Sbjct 455 GTGATTTTTTTGTAGGAATTGTTGTATTTCTTTCTATTAATTTCGTCATTACTCCTCCAG 514 Query 281679 CTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTT 281738 ||||||||| ||||||||||||||||| ||||||| | | || || ||| | || | Sbjct 515 CTGTTTCTAGACCAAGAGAAAGAGGAGCAACATCAAGCAACAAAAGATCTTGTACTTGTG 574 Query 281739 CATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCAT 281798 | | || || | |||||||| || | ||| |||||||||||||||||||||| Sbjct 575 AACTATTTACTCCTTTTAATATAGCTGCCTGTACAGCTGCACCATATGCAACAGCTTCAT 634 Query 281799 CAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTA 281858 ||||||| | || | ||| ||| ||||| ||||| | | | ||||||| || Sbjct 635 CAGGATTTATAGAACGACAAGGTTCTTTTCCATTAAAAAATTCTTGTATAAGTTGTTGTA 694 Query 281859 CCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCA 281918 ||| || || | | ||||||||| || ||||||| |||||| || | ||||| | Sbjct 695 TCTTCGGTATTCTTGTTGATCCTCCCACCAATACAACTTCATGTACACTTCGCTTATCTA 754 Query 281919 GTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAAC 281978 ||| || ||||| || || ||| |||| ||| || | || || Sbjct 755 TACCACTATCTTTTAGTACTTTCTCTACAGGTACAAGTGAGTTTCTGAAGTAATCCATAC 814 Query 281979 AAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAAG 282038 |||||||||||||| |||| | || ||||| ||| |||||||| || || || | | Sbjct 815 AAAGTTCTTCGAATCTAGCACGAGAAAGAGAAACAGAGTAATCAATACCCTCAAAAAGTG 874 Query 282039 AATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATG 282098 |||| | ||| || |||| ||| || | ||||| | | ||| || | ||||||| Sbjct 875 AATCTATTTCTATAGTAGCTTGTGTACTACTAGATAAAGTTCTTTTCGCTCTTTCACATT 934 Query 282099 CTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG-ATTCAAATC---TGTTTTATATTTT 282154 ||| |||| ||||| || || | ||||| ||| | || ||| || ||| ||| Sbjct 935 GTGTTCTTAATCTTCTCAATGC-TCTGCTGTTTGTACTCGGATCCTTACTTCTATTCTTT 993 Query 282155 CTCTTGAAATCTTCAACACA 282174 ||||| ||||| | |||||| Sbjct 994 CTCTTAAAATCCTGAACACA 1013 >seq4039 Length=7894 Score = 304 bits (336), Expect = 1e-76 Identities = 623/920 (68%), Gaps = 7/920 (1%) Strand=Plus/Minus Query 281260 ATAATTTTCTAATTCATTTTTAGAATCAACA-GCAGCTTTTTTCTTGTTATCTGCTTCTT 281318 ||||||||| | | |||| |||| || ||| | | || ||| | | |||| | ||| Sbjct 919 ATAATTTTCAAGTGCATTCTTAGCTTCTACACGTTGTTTATTTGCT-TCATCTTCGGCTT 861 Query 281319 CAAATTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGAT 281378 | ||| | || || || |||||| || || | | | | | | ||| || || Sbjct 860 TATATTTCTCCGCCTCAGCAACCATTCTATCTATCTCACCCTGACTTAGTCTACCCTTAT 801 Query 281379 TATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAA 281438 ||| || || || || | || || || ||| ||| || | || || ||||| | Sbjct 800 CATTGGTGATGGTGATCTGGTTTGACTTTCCTGTATTTTTTTCTGTTGCTGTAACATTCA 741 Query 281439 GAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAG 281498 ||| ||||| ||||| | ||| || || ||||| ||||| || || ||||| | |||| Sbjct 740 TAATGCCATTTGCATCTATATCGAAAGTAACTTCTATTTGGGGTACTCCTCTTGGTGCAG 681 Query 281499 GTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTT 281558 | || || || || | || ||| | || | |||||||||||| || | | || || Sbjct 680 GAGGAATACCATCAAGATGAAACTTGCCTAATAAATTATTATCTTTTGTCATTGCTCTTT 621 Query 281559 CACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTC 281618 | |||||||||| ||| ||| || | | |||||| |||| ||| ||||| |||| | Sbjct 620 CTCCCTCGAAAACTTGTATAAGTACACCCGGTTGATTGTCTGCATATGTTGTGAATATTT 561 Query 281619 TGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAG 281678 |||||||| |||||||||||| ||||| || || | || ||||| | ||| || | Sbjct 560 GTGATTTTTTTGTAGGAATTGTTGTATTTCTTTCTATTAATTTCGTCATCACACCTCCTG 501 Query 281679 CTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTT 281738 |||| |||| ||||||||||||||||| ||||||| | | || || ||| | || | Sbjct 500 CTGTCTCTAGACCAAGAGAAAGAGGAGCAACATCAAGCAACAAAAGATCTTGTACTTGTG 441 Query 281739 CATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCAT 281798 | | || || | |||||||| || | ||| ||||||||||||||||| |||| Sbjct 440 AACTATTTACTCCTTTTAATATAGCTGCCTGTACAGCTGCACCATATGCAACAGCCTCAT 381 Query 281799 CAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTA 281858 | || || | || | | ||| ||| || || ||||| | | | ||||||| || Sbjct 380 CTGGGTTTATAGAACGACATGGTTCTTTTCCGTTAAAAAATTCTTGTATAAGTTGTTGTA 321 Query 281859 CCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCA 281918 ||| || || | | ||||||||| || ||||||| |||||| || | ||||| | Sbjct 320 TCTTCGGTATTCTTGTTGATCCTCCCACCAATACAACTTCATGTACACTTCGCTTATCTA 261 Query 281919 GTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAAC 281978 |||| || ||||| || || ||| |||| | ||| || | || || Sbjct 260 TACCACTATCCTTCAATACTTTCTCTACAGGTACAAGTGAATTTCTGAAGTAATCCATAC 201 Query 281979 AAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAAG 282038 |||||||||||||| |||| | || ||||| ||| |||||||| || || || | | Sbjct 200 AAAGTTCTTCGAATCTAGCACGAGAAAGAGAAACAGAGTAATCAATACCCTCAAAAAGTG 141 Query 282039 AATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATG 282098 |||| | ||| || |||| ||| || | |||| | | ||| || | |||||| Sbjct 140 AATCTATTTCTATAGTAGCTTGTGTACTACTCGATAAAGTTCTTTTCGCTCTTTCACACT 81 Query 282099 CTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG-ATTCAAATC---TGTTTTATATTTT 282154 ||| |||||||||| || || | ||||| ||| | || ||| || ||| ||| Sbjct 80 GTGTTCTTAGTCTTCTCAATGC-TCTGCTGTTTGTACTCGGATCCTTACTTCTATTCTTT 22 Query 282155 CTCTTGAAATCTTCAACACA 282174 ||||| ||||| | |||||| Sbjct 21 CTCTTAAAATCCTGAACACA 2 >seq4291 Length=7478 Score = 159 bits (176), Expect = 3e-33 Identities = 195/265 (74%), Gaps = 6/265 (2%) Strand=Plus/Plus Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 282334 ||||| ||| |||||||| | ||| ||| ||||| | | |||| | ||| || Sbjct 4080 ACATCGAAGGTACCACCACCAAGATCGTAAACAAGTATAGTTTTTTCAT---CTT---TT 4133 Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 || || |||||||| |||| |||||||||||| |||||||| || || | | ||||||| Sbjct 4134 TTGTCTAGACCATAAGCAATAGCAGCAGCAGTGGGTTCATTGATGATCCGAATAACATTA 4193 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 ||||| ||||| |||||||||||| || ||||| | || | ||| ||||| |||||| Sbjct 4194 AGACCTGCAATAGCTCCTGCATCTTTTGTAGCTTGACGCTGAGCATCATTAAAGTATGCA 4253 Query 282455 GGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTC 282514 || ||||||| ||| |||| |||||||| | || | ||| |||| || |||| Sbjct 4254 GGTACAGTAACAACAGCATTCTTTACTTCTCTCCCTAGATAGTTTTCTGCTACTTCTTTC 4313 Query 282515 ATTTTACTTAAAATCATTGATGAAA 282539 || || | ||| | ||| | ||||| Sbjct 4314 ATCTTTCCTAATACCATAGCTGAAA 4338 Score = 138 bits (152), Expect = 8e-27 Identities = 249/363 (69%), Gaps = 11/363 (3%) Strand=Plus/Plus Query 281590 TTGATTATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTC 281648 ||| |||||||| ||||| | || | | || |||| || ||||| |||||| Sbjct 2121 TTGGTTATCTGAGTAAGTGGAGAA-AGTTTGTGTTTTCTTGGTGGGAATGACGGTGTTTT 2179 Query 281649 TATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGA 281708 | | || | || | ||||| ||||||||| ||||| | ||| || | |||||| || | Sbjct 2180 TGTTGATGACCTTCGCCATAACACCACCAGCAGTTTCAATACCGAGTGTAAGAGGCGTAA 2239 Query 281709 CATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTT 281768 |||||| | || |||| || | ||| | | | |||||| | || | Sbjct 2240 CATCAAGCAATACCATATCCTGTGTTCCTTCTCCGGAT---------AGAATACCAGCCT 2290 Query 281769 GAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTAC 281828 ||| ||| ||||||||||||||||||||||| ||||| | | ||| ||| ||| | Sbjct 2291 GAACAGCTGCACCATATGCAACAGCTTCATCGGGATTGATGCCTCTGTTTGGTTCTTTTC 2350 Query 281829 CATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTA 281888 | |||||||| | || ||| ||| || ||| |||||||||| ||| || ||||| | Sbjct 2351 CGTTGAAAAATTCCTTAATAAGCTGTTGTATCTTTGGAATACGAGTTGAACCACCAACAA 2410 Query 281889 ATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGG 281948 ||||| |||| | ||| ||||| | ||| | || ||| |||||||| || || | Sbjct 2411 GAACAATCTCATCTATCTGAGATTTCTTCAGATCTGCATCTTCTAAAACTTGTTTCACAG 2470 Query 281949 GTT 281951 ||| Sbjct 2471 GTT 2473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740122946079936