Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20mitis_20[genbank_20GCA_5F000499745.1_202013-11-06] 10,336 sequences; 60,415,144 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq3225 111 2e-19 >seq3225 Length=28280 Score = 111 bits (122), Expect = 2e-19 Identities = 151/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGG-ACGAGTCCTCGAG 133513 ||||| | ||| || |||||||| |||||||| ||| || ||| || | || || || Sbjct 174 AAATGAAGGGTAGATTCTTTCTGAATATTGTAGTCGGACAGCGTTCTACCA-TCTTCTAG 232 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| || || ||| ||||||| |||||||| || ||||| || ||||||||||| || Sbjct 233 CTGTTTTCCAGCGAAAATGAGACGCTGCTGATCAGGAGGAATACCTTCCTTGTCCTGAAT 292 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 |||| || | | || | || || | ||||| || || | |||| ||| ||||| Sbjct 293 CTTTGCTTTCACGTTTTCGATGGTATCTGATGGCTCAACATCCAGAGTGATGGTCTTGCC 352 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATG 133661 |||||||| || || || || |||||| Sbjct 353 AGTCAGAGTCTTCACAAAGATTTGCATG 380 Score = 109 bits (120), Expect = 5e-19 Identities = 150/207 (72%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCA---TCGTGGACGAGTCCTCGAG 133513 ||| | ||| || |||||||| || ||||| ||| || || || | | || || || Sbjct 404 ATGAAGGGTAGATTCTTTCTGAATGTTGTAGTCGGACAGTGTCCTG--CCA-TCTTCCAG 460 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| ||| ||||||| ||||||||||| |||||||| || |||||||| || Sbjct 461 CTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGAAT 520 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 |||| || | | ||| | || || | ||||| || || | |||| ||| ||||| Sbjct 521 CTTTGCTTTCACGTTCTCTATAGTATCTGATGGCTCAACATCCAGAGTGATGGTCTTGCC 580 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || || || |||||||| Sbjct 581 CGTGAGCGTCTTGACAAAGATCTGCAT 607 Score = 104 bits (114), Expect = 2e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 133510 CGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGG 133569 |||||||||| || ||| ||||||| |||||||| || ||||| || ||||||||||| Sbjct 1 CGAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCAGGAGGAATACCTTCCTTGTCCT 60 Query 133570 TGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTT 133629 |||||| || | | |||| || || | ||||| || || | ||||| || | Sbjct 61 GAATCTTTGCTTTCACGTTTTCAATGGTATCTGATGGCTCAACATCCAAGGTGATCGTCT 120 Query 133630 TGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 |||| |||||||| || ||||| || |||||| Sbjct 121 TGCCAGTCAGAGTCTTCACGAAGATTTGCATG 152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483358342032640