Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eimeria_20mitis_20[genbank_20GCA_5F000499745.1_202013-11-06] 10,336 sequences; 60,415,144 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq3225 104 2e-17 >seq3225 Length=28280 Score = 104 bits (114), Expect = 2e-17 Identities = 155/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 || ||| | ||| ||||| | | | || ||||| ||||| ||||||||| || || | Sbjct 161 CAGGCGAAGAACTAAATGAAGGGTAGATTCTTTCTGAATATTGTAGTCGGACAGCGTTCT 220 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| |||||||| || | | || |||||||| ||||| ||||| || ||||| Sbjct 221 ACCATCTTCTAGCTGTTTTCCAGCGAAAATGAGACGCTGCTGATCAGGAGGAATACCTTC 280 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 || || ||| ||| ||||| | ||| | ||||| | ||||| || || | || Sbjct 281 CTTGTCCTGAATCTTTGCTTTCACGTTTTCGATGGTATCTGATGGCTCAACATCCAGAGT 340 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 | || || ||||||||||| || | || || |||||| Sbjct 341 GATGGTCTTGCCAGTCAGAGTCTTCACAAAGATTTGCATG 380 Score = 86.0 bits (94), Expect = 6e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 131973 CGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGG 132032 ||||||| || |||| | || |||||||| ||||| ||||| || ||||| || || Sbjct 1 CGAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCAGGAGGAATACCTTCCTTGTCCT 60 Query 132033 TAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTT 132092 ||| ||| ||||| | ||| | ||||| | ||||| || || | || | ||| | Sbjct 61 GAATCTTTGCTTTCACGTTTTCAATGGTATCTGATGGCTCAACATCCAAGGTGATCGTCT 120 Query 132093 TACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 | ||||||||||| || | ||| || |||||| Sbjct 121 TGCCAGTCAGAGTCTTCACGAAGATTTGCATG 152 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||| ||| | | | || ||||| ||||||||||||||| || || | |||||| Sbjct 399 ACCAGATGAAGGGTAGATTCTTTCTGAATGTTGTAGTCGGACAGTGTCCTGCCATCTTCC 458 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| || |||| | || |||||||| || || ||||| || || || || || | Sbjct 459 AGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGA 518 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || ||| ||||| | || | |||||| | ||||| || || | || | || || Sbjct 519 ATCTTTGCTTTCACGTTCTCTATAGTATCTGATGGCTCAACATCCAGAGTGATGGTCTTG 578 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || || || | || |||||||| Sbjct 579 CCCGTGAGCGTCTTGACAAAGATCTGCAT 607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476549621832960